BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7424 (PAB7424) DE:Hypothetical protein
         (92 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C75017 hypothetical protein PAB7424 - Pyrococcus abyssi (st...   179  4e-45
pir||B71455 hypothetical protein PHS005 - Pyrococcus horikoshii ...   161  2e-39

>pir||C75017 hypothetical protein PAB7424 - Pyrococcus abyssi (strain Orsay)
          >gi|5459091|emb|CAB50577.1| (AJ248288) hypothetical
          protein [Pyrococcus abyssi]
          Length = 92
          
 Score =  179 bits (450), Expect = 4e-45
 Identities = 92/92 (100%), Positives = 92/92 (100%)

Query: 1  MIKRKLCREFIEEIDRLERSIVELEEQIIELKAQLKMKNEEIITLATENANLKYKLERLE 60
          MIKRKLCREFIEEIDRLERSIVELEEQIIELKAQLKMKNEEIITLATENANLKYKLERLE
Sbjct: 1  MIKRKLCREFIEEIDRLERSIVELEEQIIELKAQLKMKNEEIITLATENANLKYKLERLE 60

Query: 61 KRYNQLINLLKKMKIPFVIIDEESFEDEQENI 92
          KRYNQLINLLKKMKIPFVIIDEESFEDEQENI
Sbjct: 61 KRYNQLINLLKKMKIPFVIIDEESFEDEQENI 92


>pir||B71455 hypothetical protein PHS005 - Pyrococcus horikoshii
          >gi|3256686|dbj|BAA29369.1| (AP000001) 92aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 92
          
 Score =  161 bits (402), Expect = 2e-39
 Identities = 78/92 (84%), Positives = 88/92 (94%)

Query: 1  MIKRKLCREFIEEIDRLERSIVELEEQIIELKAQLKMKNEEIITLATENANLKYKLERLE 60
          MIK+ LC+EFIEEIDRLERS+VELEEQIIELK QLKMKNEEI TLA ENANLKYKLERLE
Sbjct: 1  MIKKYLCKEFIEEIDRLERSVVELEEQIIELKTQLKMKNEEITTLALENANLKYKLERLE 60

Query: 61 KRYNQLINLLKKMKIPFVIIDEESFEDEQENI 92
          +RYNQL+NLLK+MK+PFVIIDEE+FE++QENI
Sbjct: 61 RRYNQLVNLLKEMKVPFVIIDEENFEEDQENI 92


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.137    0.347 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29354737
Number of Sequences: 2977
Number of extensions: 1053914
Number of successful extensions: 14767
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14765
Number of HSP's gapped (non-prelim): 2
length of query: 92
length of database: 189,106,746
effective HSP length: 58
effective length of query: 34
effective length of database: 154,394,500
effective search space: 5249413000
effective search space used: 5249413000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 157 (65.6 bits)