BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7428 (rpoE2) DE:DNA-directed RNA polymerase, subunit E''
(rpoE2)
(61 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H75018 DNA-directed RNA polymerase, chain E'' (rpoe2) PAB74... 129 3e-30
gi|11498716 DNA-directed RNA polymerase, subunit E'' (rpoE2) [Ar... 74 2e-13
pir||D69133 DNA-dependent RNA polymerase, subunit E'' - Methanob... 66 5e-11
>pir||H75018 DNA-directed RNA polymerase, chain E'' (rpoe2) PAB7428 -
Pyrococcus abyssi (strain Orsay)
>gi|5459104|emb|CAB50590.1| (AJ248288) DNA-directed RNA
polymerase, subunit E'' (rpoE2) [Pyrococcus abyssi]
Length = 60
Score = 129 bits (322), Expect = 3e-30
Identities = 60/60 (100%), Positives = 60/60 (100%)
Query: 2 TEKACRNCHYITTEDQCPVCGSRDLSEEWFDLVIIIDVENSEIAKKIGAKVPGKYAVRVR 61
TEKACRNCHYITTEDQCPVCGSRDLSEEWFDLVIIIDVENSEIAKKIGAKVPGKYAVRVR
Sbjct: 1 TEKACRNCHYITTEDQCPVCGSRDLSEEWFDLVIIIDVENSEIAKKIGAKVPGKYAVRVR 60
>gi|11498716 DNA-directed RNA polymerase, subunit E'' (rpoE2) [Archaeoglobus
fulgidus] >gi|7451310|pir||C69389 DNA-directed RNA
polymerase, subunit E'' (rpoE2) homolog - Archaeoglobus
fulgidus >gi|2649483|gb|AAB90137.1| (AE001027)
DNA-directed RNA polymerase, subunit E'' (rpoE2)
[Archaeoglobus fulgidus]
Length = 62
Score = 73.7 bits (178), Expect = 2e-13
Identities = 32/61 (52%), Positives = 44/61 (71%), Gaps = 1/61 (1%)
Query: 1 MTEKACRNCHYITTEDQ-CPVCGSRDLSEEWFDLVIIIDVENSEIAKKIGAKVPGKYAVR 59
M E AC+NC +I + C CGS DL++EW+ V+I+D E SEIAK++ K+PGKYA+R
Sbjct: 1 MAELACKNCRFINVDTNICRNCGSTDLTKEWYGYVVIVDPEKSEIAKRLEIKIPGKYALR 60
Query: 60 V 60
V
Sbjct: 61 V 61
>pir||D69133 DNA-dependent RNA polymerase, subunit E'' - Methanobacterium
thermoautotrophicum (strain Delta H)
>gi|2621315|gb|AAB84771.1| (AE000812) DNA-dependent RNA
polymerase, subunit E'' [Methanobacterium
thermoautotrophicum]
Length = 60
Score = 66.0 bits (158), Expect = 5e-11
Identities = 30/61 (49%), Positives = 43/61 (70%), Gaps = 1/61 (1%)
Query: 1 MTEKACRNCHYITTEDQCPVCGSRDLSEEWFDLVIIIDVENSEIAKKIGAKVPGKYAVRV 60
MTEKAC C IT++++CPVC S W L+IIID + S+IA+++ +PG+YA+RV
Sbjct: 1 MTEKACTRCKRITSDERCPVCNV-PASTNWSGLLIIIDPDKSDIARELNITLPGEYALRV 59
Query: 61 R 61
R
Sbjct: 60 R 60
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.321 0.137 0.426
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21090142
Number of Sequences: 2977
Number of extensions: 590539
Number of successful extensions: 1982
Number of sequences better than 1.0e-10: 3
Number of HSP's better than 0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1979
Number of HSP's gapped (non-prelim): 3
length of query: 61
length of database: 189,106,746
effective HSP length: 40
effective length of query: 21
effective length of database: 165,167,266
effective search space: 3468512586
effective search space used: 3468512586
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 156 (65.2 bits)