BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7435 (rps27E) DE:SSU ribosomal protein S27E (rps27E)
(65 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75022 ssu ribosomal protein s27e (rps27e) PAB7435 - Pyroco... 137 2e-32
sp|P54028|RS27_METJA 30S RIBOSOMAL PROTEIN S27E >gi|2129266|pir|... 84 1e-16
sp|O27364|RS27_METTH 30S RIBOSOMAL PROTEIN S27E >gi|7440570|pir|... 79 5e-15
gi|11498932 SSU ribosomal protein S27E (rps27E) [Archaeoglobus f... 76 6e-14
sp|Q9YF01|RS27_AERPE 30S RIBOSOMAL PROTEIN S27E >gi|7521383|pir|... 72 8e-13
gb|AAK41313.1| SSU ribosomal protein S27E (rps27E) [Sulfolobus s... 68 1e-11
emb|CAC12329.1| (AL445066) ribosomal protein S27 related protein... 66 5e-11
>pir||E75022 ssu ribosomal protein s27e (rps27e) PAB7435 - Pyrococcus abyssi
(strain Orsay) >gi|5459133|emb|CAB50619.1| (AJ248288)
SSU ribosomal protein S27E (rps27E) [Pyrococcus abyssi]
Length = 65
Score = 137 bits (341), Expect = 2e-32
Identities = 65/65 (100%), Positives = 65/65 (100%)
Query: 1 MALPRNVIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKI 60
MALPRNVIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKI
Sbjct: 1 MALPRNVIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKI 60
Query: 61 LEVLE 65
LEVLE
Sbjct: 61 LEVLE 65
>sp|P54028|RS27_METJA 30S RIBOSOMAL PROTEIN S27E >gi|2129266|pir||C64331 ribosomal
protein S27 - Methanococcus jannaschii
>gi|1499029|gb|AAB98237.1| (U67480) SSU ribosomal
protein S27E [Methanococcus jannaschii]
Length = 62
Score = 84.3 bits (205), Expect = 1e-16
Identities = 37/58 (63%), Positives = 46/58 (78%)
Query: 7 VIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKILEVL 64
+IP PR++FLRV+C +C NEQIVF PAT V+C CG LVEP GGKG ++AKILE+L
Sbjct: 4 LIPQPRTKFLRVQCPECNNEQIVFGSPATVVKCLTCGKVLVEPRGGKGKVKAKILEIL 61
>sp|O27364|RS27_METTH 30S RIBOSOMAL PROTEIN S27E >gi|7440570|pir||H69040 ribosomal
protein S27 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2622414|gb|AAB85787.1| (AE000895)
ribosomal protein S27 [Methanobacterium
thermoautotrophicum]
Length = 63
Score = 79.2 bits (192), Expect = 5e-15
Identities = 34/54 (62%), Positives = 44/54 (80%)
Query: 12 RSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKILEVLE 65
+ FLRVKC+DCGN+Q+VF A+ V+C +CG TLVEPTGGK I+A+ILEVL+
Sbjct: 10 KGNFLRVKCLDCGNQQVVFDRAASYVQCIICGKTLVEPTGGKSKIKAQILEVLD 63
>gi|11498932 SSU ribosomal protein S27E (rps27E) [Archaeoglobus fulgidus]
>gi|6647803|sp|O28935|RS27_ARCFU 30S RIBOSOMAL PROTEIN
S27E >gi|7440569|pir||E69416 SSU ribosomal protein S27E
(rps27E) homolog - Archaeoglobus fulgidus
>gi|2649240|gb|AAB89911.1| (AE001011) SSU ribosomal
protein S27E (rps27E) [Archaeoglobus fulgidus]
Length = 58
Score = 75.7 bits (183), Expect = 6e-14
Identities = 30/53 (56%), Positives = 44/53 (82%)
Query: 13 SRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKILEVLE 65
SRF++VKC DC +EQ++F HP+T V+C +CG T+ EPTGGKG I+A+I+E ++
Sbjct: 3 SRFVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIKAEIIEYVD 55
>sp|Q9YF01|RS27_AERPE 30S RIBOSOMAL PROTEIN S27E >gi|7521383|pir||G72737 probable
ribosomal protein S27 APES015 - Aeropyrum pernix
(strain K1) >gi|5104079|dbj|BAA79395.1| (AP000059) 73aa
long hypothetical 30S ribosomal protein S27 [Aeropyrum
pernix]
Length = 73
Score = 71.8 bits (173), Expect = 8e-13
Identities = 34/54 (62%), Positives = 36/54 (65%)
Query: 7 VIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKI 60
+IP PRSRFL V C CGN Q+VFSH R RC CG LVEPTGGK I KI
Sbjct: 15 LIPRPRSRFLLVTCPKCGNRQVVFSHSTFRARCLNCGEVLVEPTGGKARILGKI 68
>gb|AAK41313.1| SSU ribosomal protein S27E (rps27E) [Sulfolobus solfataricus]
Length = 66
Score = 67.9 bits (163), Expect = 1e-11
Identities = 31/60 (51%), Positives = 40/60 (66%)
Query: 5 RNVIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKILEVL 64
R +IP P+SRFLRVKC +CGNEQ +FSH VRC CG LV GGK I +++ ++
Sbjct: 6 RVLIPEPKSRFLRVKCPNCGNEQTIFSHATFPVRCLSCGTELVYSMGGKAKIVGEVVRIM 65
>emb|CAC12329.1| (AL445066) ribosomal protein S27 related protein [Thermoplasma
acidophilum]
Length = 65
Score = 66.0 bits (158), Expect = 5e-11
Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 4/61 (6%)
Query: 4 PRNVIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKILEV 63
P+N+ F+++KC DCGN Q+VF+ P++ V CN+CGAT+ +PTGG +++EV
Sbjct: 9 PKNI----NGHFVKIKCRDCGNVQVVFARPSSTVTCNICGATIAKPTGGILATSGEVVEV 64
Query: 64 L 64
L
Sbjct: 65 L 65
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.327 0.143 0.447
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25167903
Number of Sequences: 2977
Number of extensions: 792498
Number of successful extensions: 2157
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2151
Number of HSP's gapped (non-prelim): 7
length of query: 65
length of database: 189,106,746
effective HSP length: 44
effective length of query: 21
effective length of database: 162,773,318
effective search space: 3418239678
effective search space used: 3418239678
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 156 (65.2 bits)