BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7435 (rps27E) DE:SSU ribosomal protein S27E (rps27E)
         (65 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E75022 ssu ribosomal protein s27e (rps27e) PAB7435 - Pyroco...   137  2e-32
sp|P54028|RS27_METJA 30S RIBOSOMAL PROTEIN S27E >gi|2129266|pir|...    84  1e-16
sp|O27364|RS27_METTH 30S RIBOSOMAL PROTEIN S27E >gi|7440570|pir|...    79  5e-15
gi|11498932 SSU ribosomal protein S27E (rps27E) [Archaeoglobus f...    76  6e-14
sp|Q9YF01|RS27_AERPE 30S RIBOSOMAL PROTEIN S27E >gi|7521383|pir|...    72  8e-13
gb|AAK41313.1| SSU ribosomal protein S27E (rps27E) [Sulfolobus s...    68  1e-11
emb|CAC12329.1| (AL445066) ribosomal protein S27 related protein...    66  5e-11

>pir||E75022 ssu ribosomal protein s27e (rps27e) PAB7435 - Pyrococcus abyssi
          (strain Orsay) >gi|5459133|emb|CAB50619.1| (AJ248288)
          SSU ribosomal protein S27E (rps27E) [Pyrococcus abyssi]
          Length = 65
          
 Score =  137 bits (341), Expect = 2e-32
 Identities = 65/65 (100%), Positives = 65/65 (100%)

Query: 1  MALPRNVIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKI 60
          MALPRNVIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKI
Sbjct: 1  MALPRNVIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKI 60

Query: 61 LEVLE 65
          LEVLE
Sbjct: 61 LEVLE 65


>sp|P54028|RS27_METJA 30S RIBOSOMAL PROTEIN S27E >gi|2129266|pir||C64331 ribosomal
          protein S27 - Methanococcus jannaschii
          >gi|1499029|gb|AAB98237.1| (U67480) SSU ribosomal
          protein S27E [Methanococcus jannaschii]
          Length = 62
          
 Score = 84.3 bits (205), Expect = 1e-16
 Identities = 37/58 (63%), Positives = 46/58 (78%)

Query: 7  VIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKILEVL 64
          +IP PR++FLRV+C +C NEQIVF  PAT V+C  CG  LVEP GGKG ++AKILE+L
Sbjct: 4  LIPQPRTKFLRVQCPECNNEQIVFGSPATVVKCLTCGKVLVEPRGGKGKVKAKILEIL 61


>sp|O27364|RS27_METTH 30S RIBOSOMAL PROTEIN S27E >gi|7440570|pir||H69040 ribosomal
          protein S27 - Methanobacterium thermoautotrophicum
          (strain Delta H) >gi|2622414|gb|AAB85787.1| (AE000895)
          ribosomal protein S27 [Methanobacterium
          thermoautotrophicum]
          Length = 63
          
 Score = 79.2 bits (192), Expect = 5e-15
 Identities = 34/54 (62%), Positives = 44/54 (80%)

Query: 12 RSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKILEVLE 65
          +  FLRVKC+DCGN+Q+VF   A+ V+C +CG TLVEPTGGK  I+A+ILEVL+
Sbjct: 10 KGNFLRVKCLDCGNQQVVFDRAASYVQCIICGKTLVEPTGGKSKIKAQILEVLD 63


>gi|11498932 SSU ribosomal protein S27E (rps27E) [Archaeoglobus fulgidus]
          >gi|6647803|sp|O28935|RS27_ARCFU 30S RIBOSOMAL PROTEIN
          S27E >gi|7440569|pir||E69416 SSU ribosomal protein S27E
          (rps27E) homolog - Archaeoglobus fulgidus
          >gi|2649240|gb|AAB89911.1| (AE001011) SSU ribosomal
          protein S27E (rps27E) [Archaeoglobus fulgidus]
          Length = 58
          
 Score = 75.7 bits (183), Expect = 6e-14
 Identities = 30/53 (56%), Positives = 44/53 (82%)

Query: 13 SRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKILEVLE 65
          SRF++VKC DC +EQ++F HP+T V+C +CG T+ EPTGGKG I+A+I+E ++
Sbjct: 3  SRFVKVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIKAEIIEYVD 55


>sp|Q9YF01|RS27_AERPE 30S RIBOSOMAL PROTEIN S27E >gi|7521383|pir||G72737 probable
          ribosomal protein S27 APES015 - Aeropyrum pernix
          (strain K1) >gi|5104079|dbj|BAA79395.1| (AP000059) 73aa
          long hypothetical 30S ribosomal protein S27 [Aeropyrum
          pernix]
          Length = 73
          
 Score = 71.8 bits (173), Expect = 8e-13
 Identities = 34/54 (62%), Positives = 36/54 (65%)

Query: 7  VIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKI 60
          +IP PRSRFL V C  CGN Q+VFSH   R RC  CG  LVEPTGGK  I  KI
Sbjct: 15 LIPRPRSRFLLVTCPKCGNRQVVFSHSTFRARCLNCGEVLVEPTGGKARILGKI 68


>gb|AAK41313.1| SSU ribosomal protein S27E (rps27E) [Sulfolobus solfataricus]
          Length = 66
          
 Score = 67.9 bits (163), Expect = 1e-11
 Identities = 31/60 (51%), Positives = 40/60 (66%)

Query: 5  RNVIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKILEVL 64
          R +IP P+SRFLRVKC +CGNEQ +FSH    VRC  CG  LV   GGK  I  +++ ++
Sbjct: 6  RVLIPEPKSRFLRVKCPNCGNEQTIFSHATFPVRCLSCGTELVYSMGGKAKIVGEVVRIM 65


>emb|CAC12329.1| (AL445066) ribosomal protein S27 related protein [Thermoplasma
          acidophilum]
          Length = 65
          
 Score = 66.0 bits (158), Expect = 5e-11
 Identities = 27/61 (44%), Positives = 42/61 (68%), Gaps = 4/61 (6%)

Query: 4  PRNVIPMPRSRFLRVKCIDCGNEQIVFSHPATRVRCNVCGATLVEPTGGKGIIRAKILEV 63
          P+N+       F+++KC DCGN Q+VF+ P++ V CN+CGAT+ +PTGG      +++EV
Sbjct: 9  PKNI----NGHFVKIKCRDCGNVQVVFARPSSTVTCNICGATIAKPTGGILATSGEVVEV 64

Query: 64 L 64
          L
Sbjct: 65 L 65


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.143    0.447 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25167903
Number of Sequences: 2977
Number of extensions: 792498
Number of successful extensions: 2157
Number of sequences better than 1.0e-10: 7
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2151
Number of HSP's gapped (non-prelim): 7
length of query: 65
length of database: 189,106,746
effective HSP length: 44
effective length of query: 21
effective length of database: 162,773,318
effective search space: 3418239678
effective search space used: 3418239678
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 156 (65.2 bits)