BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB7439 (fdxA) DE:ferredoxin (fdxA)
         (67 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75024 ferredoxin (fdxa) PAB7439 - Pyrococcus abyssi (strai...   142  4e-34
sp|P29603|FER_PYRFU FERREDOXIN >gi|517273|emb|CAA56040.1| (X7950...   141  1e-33
pir||A44203 ferredoxin [3Fe-4S] - Pyrococcus furiosus                 139  4e-33
gb|AAB01229.1| (U56939) 4Fe-4S ferredoxin [Thermococcus sp. JDF-3]    122  4e-28
dbj|BAB11931.1| (AB042645) ferredoxin [Thermococcus profundus]        101  1e-21
sp|P29604|FER_THELI FERREDOXIN >gi|631999|pir||B44203 ferredoxin...    79  6e-15
sp|P46797|FER_THEMA FERREDOXIN >gi|1072838|pir||S44350 ferredoxi...    71  2e-12

>pir||A75024 ferredoxin (fdxa) PAB7439 - Pyrococcus abyssi (strain Orsay)
          >gi|5459145|emb|CAB50631.1| (AJ248288) ferredoxin
          (fdxA) [Pyrococcus abyssi]
          Length = 67
          
 Score =  142 bits (355), Expect = 4e-34
 Identities = 67/67 (100%), Positives = 67/67 (100%)

Query: 1  MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVS 60
          MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVS
Sbjct: 1  MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVS 60

Query: 61 AITIEEA 67
          AITIEEA
Sbjct: 61 AITIEEA 67


>sp|P29603|FER_PYRFU FERREDOXIN >gi|517273|emb|CAA56040.1| (X79502) ferredoxin
          [Pyrococcus furiosus]
          Length = 67
          
 Score =  141 bits (351), Expect = 1e-33
 Identities = 65/67 (97%), Positives = 67/67 (99%)

Query: 1  MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVS 60
          MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVE+IEDEELYNCAKEAME+CPVS
Sbjct: 1  MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVS 60

Query: 61 AITIEEA 67
          AITIEEA
Sbjct: 61 AITIEEA 67


>pir||A44203 ferredoxin [3Fe-4S] - Pyrococcus furiosus
          Length = 66
          
 Score =  139 bits (346), Expect = 4e-33
 Identities = 64/66 (96%), Positives = 66/66 (99%)

Query: 2  AWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVSA 61
          AWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVE+IEDEELYNCAKEAME+CPVSA
Sbjct: 1  AWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSA 60

Query: 62 ITIEEA 67
          ITIEEA
Sbjct: 61 ITIEEA 66


>gb|AAB01229.1| (U56939) 4Fe-4S ferredoxin [Thermococcus sp. JDF-3]
          Length = 67
          
 Score =  122 bits (304), Expect = 4e-28
 Identities = 55/67 (82%), Positives = 59/67 (87%)

Query: 1  MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVS 60
          MAWKV +DQD CIGDAICASLCPDVFEM DEGKAQP VE+IEDE LYNCA EA E+CPVS
Sbjct: 1  MAWKVKIDQDVCIGDAICASLCPDVFEMGDEGKAQPIVEVIEDENLYNCAVEAAEACPVS 60

Query: 61 AITIEEA 67
           IT+EEA
Sbjct: 61 CITVEEA 67


>dbj|BAB11931.1| (AB042645) ferredoxin [Thermococcus profundus]
          Length = 63
          
 Score =  101 bits (248), Expect = 1e-21
 Identities = 48/67 (71%), Positives = 55/67 (81%), Gaps = 4/67 (5%)

Query: 1  MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVS 60
          MAWKV+VDQDTCIGDAICASLCPDVFEM D+GKA P V+  + E    CA+EA E+CPV 
Sbjct: 1  MAWKVTVDQDTCIGDAICASLCPDVFEMGDDGKAHPIVDTTDLE----CAQEAAEACPVG 56

Query: 61 AITIEEA 67
          AIT+EEA
Sbjct: 57 AITLEEA 63


>sp|P29604|FER_THELI FERREDOXIN >gi|631999|pir||B44203 ferredoxin [3Fe-4S] -
          Thermococcus litoralis
          Length = 59
          
 Score = 78.8 bits (191), Expect = 6e-15
 Identities = 38/62 (61%), Positives = 45/62 (72%), Gaps = 4/62 (6%)

Query: 4  KVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVSAIT 63
          KVSVD+D CIG  +CAS+CPDVFEM+D+GKA+  V     E    CAKEA ESCP  AIT
Sbjct: 2  KVSVDKDACIGCGVCASICPDVFEMDDDGKAKALVA----ETDLECAKEAAESCPTGAIT 57

Query: 64 IE 65
          +E
Sbjct: 58 VE 59


>sp|P46797|FER_THEMA FERREDOXIN >gi|1072838|pir||S44350 ferredoxin [4Fe-4S] fdx
          [validated] - Thermotoga maritima  (strain MSB8)
          >gi|1633514|pdb|1ROF|  Nmr Study Of 4fe-4s Ferredoxin
          Of Thermatoga Maritima >gi|1942765|pdb|1VJW|  Structure
          Of Oxidoreductase (Nadp+(A),Ferredoxin(A))
          >gi|558655|emb|CAA57669.1| (X82178) ferredoxin
          [Thermotoga maritima] >gi|780791|gb|AAA65437.1|
          (U24145) ferrodoxin [Thermotoga maritima]
          >gi|4981465|gb|AAD36008.1|AE001757_1 (AE001757)
          ferredoxin [Thermotoga maritima]
          Length = 60
          
 Score = 70.6 bits (170), Expect = 2e-12
 Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)

Query: 4  KVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVSAIT 63
          KV VD D CIG  +C +LCPDVF++ D+GKA    ++++ E    CAK+A +SCP  AI+
Sbjct: 2  KVRVDADACIGCGVCENLCPDVFQLGDDGKA----KVLQPETDLPCAKDAADSCPTGAIS 57

Query: 64 IEE 66
          +EE
Sbjct: 58 VEE 60


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.314    0.130    0.391 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26131163
Number of Sequences: 2977
Number of extensions: 836815
Number of successful extensions: 2113
Number of sequences better than 1.0e-10: 7
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2105
Number of HSP's gapped (non-prelim): 7
length of query: 67
length of database: 189,106,746
effective HSP length: 46
effective length of query: 21
effective length of database: 161,576,344
effective search space: 3393103224
effective search space used: 3393103224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 156 (65.2 bits)