BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB7439 (fdxA) DE:ferredoxin (fdxA)
(67 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||A75024 ferredoxin (fdxa) PAB7439 - Pyrococcus abyssi (strai... 142 4e-34
sp|P29603|FER_PYRFU FERREDOXIN >gi|517273|emb|CAA56040.1| (X7950... 141 1e-33
pir||A44203 ferredoxin [3Fe-4S] - Pyrococcus furiosus 139 4e-33
gb|AAB01229.1| (U56939) 4Fe-4S ferredoxin [Thermococcus sp. JDF-3] 122 4e-28
dbj|BAB11931.1| (AB042645) ferredoxin [Thermococcus profundus] 101 1e-21
sp|P29604|FER_THELI FERREDOXIN >gi|631999|pir||B44203 ferredoxin... 79 6e-15
sp|P46797|FER_THEMA FERREDOXIN >gi|1072838|pir||S44350 ferredoxi... 71 2e-12
>pir||A75024 ferredoxin (fdxa) PAB7439 - Pyrococcus abyssi (strain Orsay)
>gi|5459145|emb|CAB50631.1| (AJ248288) ferredoxin
(fdxA) [Pyrococcus abyssi]
Length = 67
Score = 142 bits (355), Expect = 4e-34
Identities = 67/67 (100%), Positives = 67/67 (100%)
Query: 1 MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVS 60
MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVS
Sbjct: 1 MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVS 60
Query: 61 AITIEEA 67
AITIEEA
Sbjct: 61 AITIEEA 67
>sp|P29603|FER_PYRFU FERREDOXIN >gi|517273|emb|CAA56040.1| (X79502) ferredoxin
[Pyrococcus furiosus]
Length = 67
Score = 141 bits (351), Expect = 1e-33
Identities = 65/67 (97%), Positives = 67/67 (99%)
Query: 1 MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVS 60
MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVE+IEDEELYNCAKEAME+CPVS
Sbjct: 1 MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVS 60
Query: 61 AITIEEA 67
AITIEEA
Sbjct: 61 AITIEEA 67
>pir||A44203 ferredoxin [3Fe-4S] - Pyrococcus furiosus
Length = 66
Score = 139 bits (346), Expect = 4e-33
Identities = 64/66 (96%), Positives = 66/66 (99%)
Query: 2 AWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVSA 61
AWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVE+IEDEELYNCAKEAME+CPVSA
Sbjct: 1 AWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEVIEDEELYNCAKEAMEACPVSA 60
Query: 62 ITIEEA 67
ITIEEA
Sbjct: 61 ITIEEA 66
>gb|AAB01229.1| (U56939) 4Fe-4S ferredoxin [Thermococcus sp. JDF-3]
Length = 67
Score = 122 bits (304), Expect = 4e-28
Identities = 55/67 (82%), Positives = 59/67 (87%)
Query: 1 MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVS 60
MAWKV +DQD CIGDAICASLCPDVFEM DEGKAQP VE+IEDE LYNCA EA E+CPVS
Sbjct: 1 MAWKVKIDQDVCIGDAICASLCPDVFEMGDEGKAQPIVEVIEDENLYNCAVEAAEACPVS 60
Query: 61 AITIEEA 67
IT+EEA
Sbjct: 61 CITVEEA 67
>dbj|BAB11931.1| (AB042645) ferredoxin [Thermococcus profundus]
Length = 63
Score = 101 bits (248), Expect = 1e-21
Identities = 48/67 (71%), Positives = 55/67 (81%), Gaps = 4/67 (5%)
Query: 1 MAWKVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVS 60
MAWKV+VDQDTCIGDAICASLCPDVFEM D+GKA P V+ + E CA+EA E+CPV
Sbjct: 1 MAWKVTVDQDTCIGDAICASLCPDVFEMGDDGKAHPIVDTTDLE----CAQEAAEACPVG 56
Query: 61 AITIEEA 67
AIT+EEA
Sbjct: 57 AITLEEA 63
>sp|P29604|FER_THELI FERREDOXIN >gi|631999|pir||B44203 ferredoxin [3Fe-4S] -
Thermococcus litoralis
Length = 59
Score = 78.8 bits (191), Expect = 6e-15
Identities = 38/62 (61%), Positives = 45/62 (72%), Gaps = 4/62 (6%)
Query: 4 KVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVSAIT 63
KVSVD+D CIG +CAS+CPDVFEM+D+GKA+ V E CAKEA ESCP AIT
Sbjct: 2 KVSVDKDACIGCGVCASICPDVFEMDDDGKAKALVA----ETDLECAKEAAESCPTGAIT 57
Query: 64 IE 65
+E
Sbjct: 58 VE 59
>sp|P46797|FER_THEMA FERREDOXIN >gi|1072838|pir||S44350 ferredoxin [4Fe-4S] fdx
[validated] - Thermotoga maritima (strain MSB8)
>gi|1633514|pdb|1ROF| Nmr Study Of 4fe-4s Ferredoxin
Of Thermatoga Maritima >gi|1942765|pdb|1VJW| Structure
Of Oxidoreductase (Nadp+(A),Ferredoxin(A))
>gi|558655|emb|CAA57669.1| (X82178) ferredoxin
[Thermotoga maritima] >gi|780791|gb|AAA65437.1|
(U24145) ferrodoxin [Thermotoga maritima]
>gi|4981465|gb|AAD36008.1|AE001757_1 (AE001757)
ferredoxin [Thermotoga maritima]
Length = 60
Score = 70.6 bits (170), Expect = 2e-12
Identities = 31/63 (49%), Positives = 44/63 (69%), Gaps = 4/63 (6%)
Query: 4 KVSVDQDTCIGDAICASLCPDVFEMNDEGKAQPKVEIIEDEELYNCAKEAMESCPVSAIT 63
KV VD D CIG +C +LCPDVF++ D+GKA ++++ E CAK+A +SCP AI+
Sbjct: 2 KVRVDADACIGCGVCENLCPDVFQLGDDGKA----KVLQPETDLPCAKDAADSCPTGAIS 57
Query: 64 IEE 66
+EE
Sbjct: 58 VEE 60
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.314 0.130 0.391
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26131163
Number of Sequences: 2977
Number of extensions: 836815
Number of successful extensions: 2113
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 2105
Number of HSP's gapped (non-prelim): 7
length of query: 67
length of database: 189,106,746
effective HSP length: 46
effective length of query: 21
effective length of database: 161,576,344
effective search space: 3393103224
effective search space used: 3393103224
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 156 (65.2 bits)