BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB8082 (rpl29P) DE:LSU ribosomal protein L29P (rpl29P)
         (60 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B75147 lsu ribosomal protein l29p (rpl29p) PAB8082 - Pyroco...   116  4e-26
pir||H71186 probable ribosomal protein L29 - Pyrococcus horikosh...   112  5e-25
sp|O74094|RL29_PYRHO 50S RIBOSOMAL PROTEIN L29P                       112  5e-25

>pir||B75147 lsu ribosomal protein l29p (rpl29p) PAB8082 - Pyrococcus abyssi
          (strain Orsay) >gi|5457767|emb|CAB49257.1| (AJ248284)
          LSU ribosomal protein L29P (rpl29P) [Pyrococcus abyssi]
          Length = 60
          
 Score =  116 bits (287), Expect = 4e-26
 Identities = 60/60 (100%), Positives = 60/60 (100%)

Query: 1  MSIEEIDAKIRELRLQLAKERGMLTMGTSLENPMVIRNLRRDIARLLTIKREKLREMRKK 60
          MSIEEIDAKIRELRLQLAKERGMLTMGTSLENPMVIRNLRRDIARLLTIKREKLREMRKK
Sbjct: 1  MSIEEIDAKIRELRLQLAKERGMLTMGTSLENPMVIRNLRRDIARLLTIKREKLREMRKK 60


>pir||H71186 probable ribosomal protein L29 - Pyrococcus horikoshii
          >gi|3258204|dbj|BAA30887.1| (AP000007) 60aa long
          hypothetical 50S ribosomal protein L29 [Pyrococcus
          horikoshii]
          Length = 60
          
 Score =  112 bits (277), Expect = 5e-25
 Identities = 58/60 (96%), Positives = 59/60 (97%)

Query: 1  MSIEEIDAKIRELRLQLAKERGMLTMGTSLENPMVIRNLRRDIARLLTIKREKLREMRKK 60
          MSIEEIDAKIRELRLQLAKERGMLTMGTSLENPMVIRNLRRDIARLLTIK+EKLREM KK
Sbjct: 1  MSIEEIDAKIRELRLQLAKERGMLTMGTSLENPMVIRNLRRDIARLLTIKKEKLREMGKK 60


>sp|O74094|RL29_PYRHO 50S RIBOSOMAL PROTEIN L29P
          Length = 68
          
 Score =  112 bits (277), Expect = 5e-25
 Identities = 58/60 (96%), Positives = 59/60 (97%)

Query: 1  MSIEEIDAKIRELRLQLAKERGMLTMGTSLENPMVIRNLRRDIARLLTIKREKLREMRKK 60
          MSIEEIDAKIRELRLQLAKERGMLTMGTSLENPMVIRNLRRDIARLLTIK+EKLREM KK
Sbjct: 9  MSIEEIDAKIRELRLQLAKERGMLTMGTSLENPMVIRNLRRDIARLLTIKKEKLREMGKK 68


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.138    0.347 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15456429
Number of Sequences: 2977
Number of extensions: 380008
Number of successful extensions: 1475
Number of sequences better than 1.0e-10: 3
Number of HSP's better than  0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1472
Number of HSP's gapped (non-prelim): 3
length of query: 60
length of database: 189,106,746
effective HSP length: 39
effective length of query: 21
effective length of database: 165,765,753
effective search space: 3481080813
effective search space used: 3481080813
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 156 (65.2 bits)