BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAB8160 (SNRNP) DE:snRNP, putative
         (75 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|Q9V0Y8|RUXX_PYRAB PUTATIVE SNRNP SM-LIKE PROTEIN >gi|7521427|...   150  2e-36
sp|O74016|RUXX_PYRHO PUTATIVE SNRNP SM-LIKE PROTEIN >gi|7451053|...   148  6e-36
gi|11498481 snRNP, putative [Archaeoglobus fulgidus] >gi|6094214...    92  8e-19
sp|O26745|RUXX_METTH PUTATIVE SNRNP SM-LIKE PROTEIN >gi|7451055|...    79  6e-15
gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulf...    65  1e-10

>sp|Q9V0Y8|RUXX_PYRAB PUTATIVE SNRNP SM-LIKE PROTEIN >gi|7521427|pir||B75106 probable
          snrnp PAB8160 - Pyrococcus abyssi (strain Orsay)
          >gi|5458074|emb|CAB49563.1| (AJ248285) snRNP, putative
          [Pyrococcus abyssi]
          Length = 75
          
 Score =  150 bits (375), Expect = 2e-36
 Identities = 75/75 (100%), Positives = 75/75 (100%)

Query: 1  MAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKI 60
          MAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKI
Sbjct: 1  MAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKI 60

Query: 61 VIRGDNVLAISPTEE 75
          VIRGDNVLAISPTEE
Sbjct: 61 VIRGDNVLAISPTEE 75


>sp|O74016|RUXX_PYRHO PUTATIVE SNRNP SM-LIKE PROTEIN >gi|7451053|pir||D71028 probable
          small nucleoprotein - Pyrococcus horikoshii
          >gi|3257945|dbj|BAA30628.1| (AP000006) 75aa long
          hypothetical small nucleoprotein [Pyrococcus
          horikoshii]
          Length = 75
          
 Score =  148 bits (371), Expect = 6e-36
 Identities = 73/75 (97%), Positives = 75/75 (99%)

Query: 1  MAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKI 60
          MAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEM+QDGEVVK+YGKI
Sbjct: 1  MAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMVQDGEVVKKYGKI 60

Query: 61 VIRGDNVLAISPTEE 75
          VIRGDNVLAISPTEE
Sbjct: 61 VIRGDNVLAISPTEE 75


>gi|11498481 snRNP, putative [Archaeoglobus fulgidus]
          >gi|6094214|sp|O29386|RUXX_ARCFU PUTATIVE SNRNP SM-LIKE
          PROTEIN >gi|7451054|pir||C69359 snRNP homolog -
          Archaeoglobus fulgidus >gi|2649736|gb|AAB90374.1|
          (AE001044) snRNP, putative [Archaeoglobus fulgidus]
          Length = 77
          
 Score = 92.1 bits (225), Expect = 8e-19
 Identities = 45/72 (62%), Positives = 56/72 (77%)

Query: 1  MAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKI 60
          M  RPLDV++RSL   V+V LK G EFRG L GYDIH+N+VL DAE IQ+GEVV++ G +
Sbjct: 1  MPPRPLDVLNRSLKSPVIVRLKGGREFRGTLDGYDIHMNLVLLDAEEIQNGEVVRKVGSV 60

Query: 61 VIRGDNVLAISP 72
          VIRGD V+ +SP
Sbjct: 61 VIRGDTVVFVSP 72


>sp|O26745|RUXX_METTH PUTATIVE SNRNP SM-LIKE PROTEIN >gi|7451055|pir||C69186 conserved
          hypothetical protein MTH649 - Methanobacterium
          thermoautotrophicum (strain Delta H)
          >gi|2621731|gb|AAB85154.1| (AE000845) conserved protein
          [Methanobacterium thermoautotrophicum]
          Length = 81
          
 Score = 79.2 bits (192), Expect = 6e-15
 Identities = 36/70 (51%), Positives = 52/70 (73%)

Query: 3  ERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKIVI 62
          +RPLD +  SL+  V++ LK   EFRG L  +D+H+N+VL DAE ++DGEV +R G ++I
Sbjct: 12 QRPLDALGNSLNSPVIIKLKGDREFRGVLKSFDLHMNLVLNDAEELEDGEVTRRLGTVLI 71

Query: 63 RGDNVLAISP 72
          RGDN++ ISP
Sbjct: 72 RGDNIVYISP 81


>gb|AAK41053.1| Small nuclear riboprotein protein (snRNP-2) [Sulfolobus
          solfataricus]
          Length = 79
          
 Score = 65.2 bits (156), Expect = 1e-10
 Identities = 37/74 (50%), Positives = 47/74 (63%)

Query: 1  MAERPLDVIHRSLDKDVLVILKKGFEFRGRLIGYDIHLNVVLADAEMIQDGEVVKRYGKI 60
          +AE    V+  SL+  VLV LK   E RG L  YD H+N+VL+D+E IQ     K+ G I
Sbjct: 4  LAETAHKVLAESLNNLVLVKLKGNKEVRGMLRSYDQHMNLVLSDSEEIQSDGSGKKLGTI 63

Query: 61 VIRGDNVLAISPTE 74
          VIRGDNV+ ISP +
Sbjct: 64 VIRGDNVILISPLQ 77


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.146    0.405 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26378458
Number of Sequences: 2977
Number of extensions: 877802
Number of successful extensions: 1738
Number of sequences better than 1.0e-10: 5
Number of HSP's better than  0.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1733
Number of HSP's gapped (non-prelim): 5
length of query: 75
length of database: 189,106,746
effective HSP length: 49
effective length of query: 26
effective length of database: 159,780,883
effective search space: 4154302958
effective search space used: 4154302958
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 156 (65.2 bits)