BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PAB8165 (rpl24E) DE:LSU ribosomal protein L24E (rpl24E)
(67 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||E75109 lsu ribosomal protein l24e (rpl24e) PAB8165 - Pyroco... 151 1e-36
sp|P54064|R24E_METJA 50S RIBOSOMAL PROTEIN L24E >gi|2129252|pir|... 92 1e-18
gi|11498372 LSU ribosomal protein L24E (rpl24E) [Archaeoglobus f... 77 2e-14
emb|CAC12241.1| (AL445066) probable 50S ribosomal protein L24E [... 71 2e-12
sp|Q10353|RL24_SCHPO 60S RIBOSOMAL PROTEIN L24 (L30) >gi|7490024... 70 3e-12
sp|O26357|R24E_METTH 50S RIBOSOMAL PROTEIN L24E >gi|7440780|pir|... 69 5e-12
gb|AAG19539.1| (AE005044) 50S ribosomal protein L24E; Rpl24e [Ha... 68 2e-11
gi|6323037 Ylr009wp [Saccharomyces cerevisiae] >gi|2131743|pir||... 68 2e-11
gi|10047102 60S ribosomal protein L30 isolog [Homo sapiens] >gi|... 67 4e-11
gi|11432377 60S ribosomal protein L30 isolog [Homo sapiens] 67 4e-11
gb|AAK40572.1| LSU ribosomal protein L24E (rpl24E) [Sulfolobus s... 66 5e-11
>pir||E75109 lsu ribosomal protein l24e (rpl24e) PAB8165 - Pyrococcus abyssi
(strain Orsay) >gi|5458101|emb|CAB49590.1| (AJ248285)
LSU ribosomal protein L24E (rpl24E) [Pyrococcus abyssi]
Length = 67
Score = 151 bits (377), Expect = 1e-36
Identities = 66/67 (98%), Positives = 67/67 (99%)
Query: 1 LARWNVCSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEAR 60
+ARWNVCSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEAR
Sbjct: 1 MARWNVCSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEAR 60
Query: 61 LQRGIRK 67
LQRGIRK
Sbjct: 61 LQRGIRK 67
>sp|P54064|R24E_METJA 50S RIBOSOMAL PROTEIN L24E >gi|2129252|pir||H64449 ribosomal
protein L24E - Methanococcus jannaschii
>gi|1592325|gb|AAB99205.1| (U67562) LSU ribosomal
protein L24E [Methanococcus jannaschii]
Length = 70
Score = 91.7 bits (224), Expect = 1e-18
Identities = 37/62 (59%), Positives = 44/62 (70%)
Query: 1 LARWNVCSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEAR 60
+ W CS+CG EPG GKM V DG VL+FCS KCE+ Y MGRNPRKLKWTK YQ+ +
Sbjct: 1 MPEWRTCSFCGYEIEPGKGKMVVEKDGTVLYFCSSKCEKSYRMGRNPRKLKWTKVYQDMK 60
Query: 61 LQ 62
+
Sbjct: 61 AE 62
>gi|11498372 LSU ribosomal protein L24E (rpl24E) [Archaeoglobus fulgidus]
>gi|3914530|sp|O29492|R24E_ARCFU 50S RIBOSOMAL PROTEIN
L24E >gi|7440781|pir||F69345 LSU ribosomal protein L24E
(rpl24E) homolog - Archaeoglobus fulgidus
>gi|2649840|gb|AAB90471.1| (AE001051) LSU ribosomal
protein L24E (rpl24E) [Archaeoglobus fulgidus]
Length = 58
Score = 77.3 bits (187), Expect = 2e-14
Identities = 34/52 (65%), Positives = 39/52 (74%), Gaps = 1/52 (1%)
Query: 6 VCSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYF-MGRNPRKLKWTKAY 56
VCS+CG EPGTGKM+VR DGRV +FCS KCE+ + R PRKLKWTK Y
Sbjct: 5 VCSFCGYDIEPGTGKMYVRRDGRVFYFCSGKCEKNMLKLKRKPRKLKWTKHY 56
>emb|CAC12241.1| (AL445066) probable 50S ribosomal protein L24E [Thermoplasma
acidophilum]
Length = 67
Score = 70.6 bits (170), Expect = 2e-12
Identities = 30/58 (51%), Positives = 38/58 (64%), Gaps = 1/58 (1%)
Query: 7 CSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYF-MGRNPRKLKWTKAYQEARLQR 63
CS+CGK EPGTG M+VR DG +L+FCS KC + + R PR +KWT Y E + R
Sbjct: 7 CSFCGKAIEPGTGIMYVRKDGAILYFCSNKCRKNMIELNRVPRYVKWTNEYHELKKMR 64
>sp|Q10353|RL24_SCHPO 60S RIBOSOMAL PROTEIN L24 (L30) >gi|7490024|pir||T38170 60s
ribosomal protein l24-3 (L30) - fission yeast
(Schizosaccharomyces pombe) >gi|1220288|emb|CAA93900.1|
(Z70043) 60s ribosomal protein l24-3 (L30)
[Schizosaccharomyces pombe]
Length = 192
Score = 70.2 bits (169), Expect = 3e-12
Identities = 30/57 (52%), Positives = 38/57 (66%)
Query: 3 RWNVCSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEA 59
R + C +C P PG G MFVRND +V FC KC + + M RNPRK+ WTKAY++A
Sbjct: 2 RVHTCYFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKMKRNPRKVAWTKAYRKA 58
>sp|O26357|R24E_METTH 50S RIBOSOMAL PROTEIN L24E >gi|7440780|pir||C69132 ribosomal
protein L24 - Methanobacterium thermoautotrophicum
(strain Delta H) >gi|2621307|gb|AAB84763.1| (AE000812)
ribosomal protein L24 [Methanobacterium
thermoautotrophicum]
Length = 53
Score = 69.5 bits (167), Expect = 5e-12
Identities = 29/50 (58%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 6 VCSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYF-MGRNPRKLKWTK 54
VCS+C + EPGTGKM+V+ DG + FFCS KCE+ +GR PRK+KW K
Sbjct: 3 VCSFCHEEIEPGTGKMYVKRDGTIYFFCSSKCEKNMIKLGRVPRKVKWVK 52
>gb|AAG19539.1| (AE005044) 50S ribosomal protein L24E; Rpl24e [Halobacterium sp.
NRC-1] >gi|11071686|dbj|BAB17307.1| (AB036344) LSU
ribosomal protein L24E [Halobacterium cutirubrum]
Length = 62
Score = 67.9 bits (163), Expect = 2e-11
Identities = 27/47 (57%), Positives = 32/47 (67%)
Query: 7 CSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYFMGRNPRKLKWT 53
C YCG EPGTG MFV NDG + FCS KCE+ +GR PR ++WT
Sbjct: 7 CDYCGDDIEPGTGTMFVHNDGSTVHFCSAKCEKNADLGREPRDVEWT 53
>gi|6323037 Ylr009wp [Saccharomyces cerevisiae] >gi|2131743|pir||S64831
ribosomal protein L24 homolog YLR009w - yeast
(Saccharomyces cerevisiae) >gi|1360302|emb|CAA97531.1|
(Z73181) ORF YLR009w [Saccharomyces cerevisiae]
Length = 199
Score = 67.5 bits (162), Expect = 2e-11
Identities = 28/53 (52%), Positives = 35/53 (65%)
Query: 7 CSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEA 59
C +C P PG G MFVRND + FC KC + + RNPRKLKWTKA+++A
Sbjct: 6 CHFCSSPCYPGHGIMFVRNDAKEFRFCRSKCHKAFKQRRNPRKLKWTKAFRKA 58
>gi|10047102 60S ribosomal protein L30 isolog [Homo sapiens]
>gi|6563296|gb|AAF17241.1|AF201949_1 (AF201949) 60S
ribosomal protein L30 isolog [Homo sapiens]
>gi|9294749|gb|AAF86651.1|AF165521_1 (AF165521)
ribosomal protein L30 isolog [Homo sapiens]
Length = 163
Score = 66.7 bits (160), Expect = 4e-11
Identities = 27/53 (50%), Positives = 36/53 (66%)
Query: 7 CSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEA 59
C +C P PG G MFVRND +V FC KC + + RNPRK++WTKA+++A
Sbjct: 6 CYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKA 58
>gi|11432377 60S ribosomal protein L30 isolog [Homo sapiens]
Length = 196
Score = 66.7 bits (160), Expect = 4e-11
Identities = 27/53 (50%), Positives = 36/53 (66%)
Query: 7 CSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYFMGRNPRKLKWTKAYQEA 59
C +C P PG G MFVRND +V FC KC + + RNPRK++WTKA+++A
Sbjct: 6 CYFCSGPIYPGHGMMFVRNDCKVFRFCKSKCHKNFKKKRNPRKVRWTKAFRKA 58
>gb|AAK40572.1| LSU ribosomal protein L24E (rpl24E) [Sulfolobus solfataricus]
Length = 61
Score = 66.3 bits (159), Expect = 5e-11
Identities = 28/55 (50%), Positives = 36/55 (64%), Gaps = 1/55 (1%)
Query: 7 CSYCGKPFEPGTGKMFVRNDGRVLFFCSRKCERYYF-MGRNPRKLKWTKAYQEAR 60
CS+CG PGTG M+VRNDG +L+FCS KC + R+P+K KWT Y + R
Sbjct: 7 CSFCGHEIPPGTGLMYVRNDGTILWFCSSKCRKSMLKYHRDPKKYKWTTRYMKVR 61
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.329 0.144 0.499
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29712029
Number of Sequences: 2977
Number of extensions: 1017904
Number of successful extensions: 2182
Number of sequences better than 1.0e-10: 11
Number of HSP's better than 0.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2171
Number of HSP's gapped (non-prelim): 11
length of query: 67
length of database: 189,106,746
effective HSP length: 40
effective length of query: 27
effective length of database: 165,167,266
effective search space: 4459516182
effective search space used: 4459516182
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 157 (65.6 bits)