BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs10023 1065313 1065158 -52 !not a gene!
         (52 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71052 hypothetical protein PH1118 - Pyrococcus horikoshii ...    79  5e-15

>pir||G71052 hypothetical protein PH1118 - Pyrococcus horikoshii
          >gi|3257534|dbj|BAA30217.1| (AP000005) 247aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 247
          
 Score = 79.2 bits (192), Expect = 5e-15
 Identities = 41/52 (78%), Positives = 44/52 (83%)

Query: 1  MKFSLTLLSFEIIRVFTIVSGIRSPLDRYLSISMPRGVLAFISALIMSPEAI 52
          MKFSLTLLSFEII V TIVSGI+SPLD+Y SIS P GVL  ISALI+SPE I
Sbjct: 1  MKFSLTLLSFEIINVLTIVSGIKSPLDKYFSISNPSGVLELISALIISPEEI 52


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.332    0.145    0.390 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14762605
Number of Sequences: 2977
Number of extensions: 352864
Number of successful extensions: 824
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 823
Number of HSP's gapped (non-prelim): 1
length of query: 52
length of database: 189,106,746
effective HSP length: 31
effective length of query: 21
effective length of database: 170,553,649
effective search space: 3581626629
effective search space used: 3581626629
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 156 (65.2 bits)