BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs10167 1026727 1026551 -59 !not a gene!
         (59 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71058 hypothetical protein PH1165 - Pyrococcus horikoshii ...    92  9e-19

>pir||G71058 hypothetical protein PH1165 - Pyrococcus horikoshii
           >gi|3257582|dbj|BAA30265.1| (AP000005) 115aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 115
           
 Score = 91.7 bits (224), Expect = 9e-19
 Identities = 46/59 (77%), Positives = 50/59 (83%)

Query: 1   MLRNFAPNLSNKLANHFILSSNPGTAGTSPPTSQPKSKAFFIFSISLSKNFEFGWNRSG 59
           M +NF P+LS+  ANHFILSSNPGTAGTSPPTSQ KSKAFF FSISL KNFE G N+SG
Sbjct: 47  MFKNFPPHLSSIPANHFILSSNPGTAGTSPPTSQLKSKAFFKFSISLFKNFEEGSNKSG 105


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.131    0.394 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23639451
Number of Sequences: 2977
Number of extensions: 688702
Number of successful extensions: 2594
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2593
Number of HSP's gapped (non-prelim): 1
length of query: 59
length of database: 189,106,746
effective HSP length: 38
effective length of query: 21
effective length of database: 166,364,240
effective search space: 3493649040
effective search space used: 3493649040
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 156 (65.2 bits)