BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs10193 1019872 1019639 -78 !not a gene!
         (78 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H71063 hypothetical protein PH1206 - Pyrococcus horikoshii ...   120  2e-27

>pir||H71063 hypothetical protein PH1206 - Pyrococcus horikoshii
           >gi|3257623|dbj|BAA30306.1| (AP000005) 170aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 170
           
 Score =  120 bits (297), Expect = 2e-27
 Identities = 62/76 (81%), Positives = 68/76 (88%)

Query: 3   GKNVPARNVMTVILATHGISGFTSIVNILSFSSSKILVAMTAGTLQPKAKTIGIMAFPGS 62
           GKNVPAR V+TVILAT GI+G  SIV ILSFSSS ILVA+TAGTLQP AKTIGI+AFPGS
Sbjct: 25  GKNVPARKVITVILATQGINGLISIVKILSFSSSSILVAITAGTLQPNAKTIGIIAFPGS 84

Query: 63  LNILKYLSMTAATLAK 78
           LN LKYLS+TAATLA+
Sbjct: 85  LNTLKYLSITAATLAR 100


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.130    0.345 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23494584
Number of Sequences: 2977
Number of extensions: 619052
Number of successful extensions: 2073
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2072
Number of HSP's gapped (non-prelim): 1
length of query: 78
length of database: 189,106,746
effective HSP length: 57
effective length of query: 21
effective length of database: 154,992,987
effective search space: 3254852727
effective search space used: 3254852727
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 156 (65.2 bits)