BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs10559 904197 903931 -89 !not a gene!
         (89 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71163 hypothetical protein PH0506 - Pyrococcus horikoshii ...   101  3e-21

>pir||E71163 hypothetical protein PH0506 - Pyrococcus horikoshii
          >gi|3256911|dbj|BAA29594.1| (AP000002) 123aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 123
          
 Score =  101 bits (248), Expect = 3e-21
 Identities = 49/65 (75%), Positives = 53/65 (81%)

Query: 1  MILLVGFKAFIAYCGIIESSEYWIFLNSSLGKDIKSLPLKIAEPPLYSIGGFLRIKEWTR 60
          +I LVGF AFIAYCGII++S YWIFL SSL   IKS PLKIA PPL  IGGFLRI+EWTR
Sbjct: 29 LIFLVGFNAFIAYCGIIDNSLYWIFLASSLESFIKSFPLKIAFPPLCVIGGFLRIREWTR 88

Query: 61 VDLPQ 65
          VD PQ
Sbjct: 89 VDFPQ 93


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.146    0.455 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25152351
Number of Sequences: 2977
Number of extensions: 774270
Number of successful extensions: 6208
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6207
Number of HSP's gapped (non-prelim): 1
length of query: 89
length of database: 189,106,746
effective HSP length: 45
effective length of query: 44
effective length of database: 162,174,831
effective search space: 7135692564
effective search space used: 7135692564
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 158 (66.0 bits)