BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs10654 883271 883002 -90 !not a gene!
         (90 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71101 hypothetical protein PH1068 - Pyrococcus horikoshii ...    80  5e-15

>pir||A71101 hypothetical protein PH1068 - Pyrococcus horikoshii
           >gi|3257484|dbj|BAA30167.1| (AP000004) 158aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 158
           
 Score = 80.0 bits (194), Expect = 5e-15
 Identities = 38/53 (71%), Positives = 44/53 (82%)

Query: 1   MLFMLEYLNPQETPRLRSFIPSSSVLAPTCRIGLLTKSQSCPSLCFLIASRTS 53
           MLFMLEYLNPQET +  SF  SS VLAPT R+GLLT++ SCP LCFL+AS+TS
Sbjct: 106 MLFMLEYLNPQETAKFTSFTASSRVLAPTWRMGLLTRNHSCPLLCFLMASKTS 158


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.136    0.402 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32439095
Number of Sequences: 2977
Number of extensions: 1015910
Number of successful extensions: 2070
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2069
Number of HSP's gapped (non-prelim): 1
length of query: 90
length of database: 189,106,746
effective HSP length: 51
effective length of query: 39
effective length of database: 158,583,909
effective search space: 6184772451
effective search space used: 6184772451
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 158 (66.0 bits)