BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs10699 870644 870381 -88 !not a gene!
         (88 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71104 hypothetical protein PH1092 - Pyrococcus horikoshii ...   112  8e-25

>pir||A71104 hypothetical protein PH1092 - Pyrococcus horikoshii
          >gi|3257508|dbj|BAA30191.1| (AP000004) 103aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 103
          
 Score =  112 bits (277), Expect = 8e-25
 Identities = 58/85 (68%), Positives = 63/85 (73%)

Query: 4  MVAAMNGLSLSSILSPVGSTPENINLASFTIFGESKSKTGLVWSKRPGQSPVVSRTPSNS 63
          MV A  GLS +SI SPVG  PEN +LASF I  ES+S TG   S  PGQSPVV RTPS  
Sbjct: 1  MVPATKGLSFTSIFSPVGRIPENTSLASFIILVESRSNTGFACSINPGQSPVVKRTPSKL 60

Query: 64 NSRAVLSSEIIARAFLSLPVTWGIT 88
          NS AVLSSE+IA+AFLS PVTWGIT
Sbjct: 61 NSTAVLSSEVIAKAFLSFPVTWGIT 85


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.313    0.127    0.360 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31512582
Number of Sequences: 2977
Number of extensions: 1079244
Number of successful extensions: 1932
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1931
Number of HSP's gapped (non-prelim): 1
length of query: 88
length of database: 189,106,746
effective HSP length: 56
effective length of query: 32
effective length of database: 155,591,474
effective search space: 4978927168
effective search space used: 4978927168
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (22.0 bits)
S2: 157 (65.6 bits)