BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs10732 863300 863046 -85 !not a gene!
         (85 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B71134 hypothetical protein PH0838 - Pyrococcus horikoshii ...    96  5e-20

>pir||B71134 hypothetical protein PH0838 - Pyrococcus horikoshii
           >gi|3257249|dbj|BAA29932.1| (AP000003) 117aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 117
           
 Score = 96.3 bits (236), Expect = 5e-20
 Identities = 53/81 (65%), Positives = 56/81 (68%), Gaps = 3/81 (3%)

Query: 5   SLCNSGFFIPIISMYSENERGMTSIVFPCPLLPGKSSMSFLTFRELEPVIVITSFSKRPA 64
           SLC   FF PI   YS  ERG+TS V P PLLPG +SMS LT  ELEPV VITSFSK P 
Sbjct: 28  SLC---FFSPITLAYSGKERGITSKVLPPPLLPGNNSMSLLTRSELEPVTVITSFSKSPE 84

Query: 65  SISGLTPRHQPSKKVTSSRKM 85
           SI GLTP H PS +  SSRKM
Sbjct: 85  SIRGLTPLHHPSSEEASSRKM 105


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.135    0.392 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29503437
Number of Sequences: 2977
Number of extensions: 986737
Number of successful extensions: 2208
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2207
Number of HSP's gapped (non-prelim): 1
length of query: 85
length of database: 189,106,746
effective HSP length: 52
effective length of query: 33
effective length of database: 157,985,422
effective search space: 5213518926
effective search space used: 5213518926
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 157 (65.6 bits)