BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs10782 849940 849677 -88 !not a gene!
         (88 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71073 hypothetical protein PH1281 - Pyrococcus horikoshii ...    80  5e-15

>pir||F71073 hypothetical protein PH1281 - Pyrococcus horikoshii
           >gi|3257701|dbj|BAA30384.1| (AP000005) 189aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 189
           
 Score = 80.0 bits (194), Expect = 5e-15
 Identities = 41/83 (49%), Positives = 57/83 (68%), Gaps = 4/83 (4%)

Query: 1   MASVHVKEDRPYLRAISVGYNHFVTPRDNFSYLLCSFLNVLHHLLVRSLLTPLLKGVSSE 60
           ++ +H+KE+RP LR+++V YN FVTPR+  SYL   F  VLHHL++   L  LL+ VSS+
Sbjct: 106 LSRIHMKENRPNLRSVTVSYNDFVTPRNYLSYLFSRFPYVLHHLIISPFLPSLLECVSSQ 165

Query: 61  GYDDSLRHEIPPIFSRRLLIKAF 83
           G ++SL HEI P    R L K+F
Sbjct: 166 GDNNSLGHEISP----RTLWKSF 184


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.143    0.429 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32553683
Number of Sequences: 2977
Number of extensions: 1098796
Number of successful extensions: 2770
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2768
Number of HSP's gapped (non-prelim): 2
length of query: 88
length of database: 189,106,746
effective HSP length: 48
effective length of query: 40
effective length of database: 160,379,370
effective search space: 6415174800
effective search space used: 6415174800
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 158 (66.0 bits)