BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs10869 828453 828178 -92 !not a gene!
         (92 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71074 hypothetical protein PH1289 - Pyrococcus horikoshii ...    96  1e-19

>pir||F71074 hypothetical protein PH1289 - Pyrococcus horikoshii
          >gi|3257709|dbj|BAA30392.1| (AP000005) 115aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 115
          
 Score = 95.6 bits (234), Expect = 1e-19
 Identities = 50/74 (67%), Positives = 57/74 (76%), Gaps = 1/74 (1%)

Query: 20 IGFMPIPSAFTMYVGSFPSSLSFSAMCIAMFPPISSSPVNANMTFPSSF-SLTRSLKASI 78
          +GF+PIPSA  MY+G+ PS  SFSAMCIA+ PPISSSPVNA +T P SF SL  S  AS+
Sbjct: 1  MGFIPIPSALIMYLGTLPSFESFSAMCIAIAPPISSSPVNAKITLPFSFSSLESSFNASM 60

Query: 79 RDATFPLSSALPLP 92
            AT PLSSALPLP
Sbjct: 61 TAATLPLSSALPLP 74


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.136    0.396 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31734468
Number of Sequences: 2977
Number of extensions: 1167730
Number of successful extensions: 3456
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3454
Number of HSP's gapped (non-prelim): 1
length of query: 92
length of database: 189,106,746
effective HSP length: 52
effective length of query: 40
effective length of database: 157,985,422
effective search space: 6319416880
effective search space used: 6319416880
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 158 (66.0 bits)