BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs10949 805779 805519 -87 !not a gene!
         (87 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B71087 hypothetical protein PH0959 - Pyrococcus horikoshii ...   123  6e-28

>pir||B71087 hypothetical protein PH0959 - Pyrococcus horikoshii
          >gi|3257373|dbj|BAA30056.1| (AP000004) 140aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 140
          
 Score =  123 bits (305), Expect = 6e-28
 Identities = 56/63 (88%), Positives = 58/63 (91%)

Query: 1  MNNDYSFLHFSFLPIPRSSLFNLLLYSPYGSSGENLGGWATLVFSPHTGQVSLSVYLPHF 60
          MNN+Y FLHFSFLPIPRSSLFNLLLYSPYGSSGENLGG ATLVFSPHTG +SL VYLPH 
Sbjct: 28 MNNNYGFLHFSFLPIPRSSLFNLLLYSPYGSSGENLGGCATLVFSPHTGHISLRVYLPHL 87

Query: 61 GHF 63
          GHF
Sbjct: 88 GHF 90


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.143    0.465 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26977046
Number of Sequences: 2977
Number of extensions: 933232
Number of successful extensions: 1651
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1650
Number of HSP's gapped (non-prelim): 1
length of query: 87
length of database: 189,106,746
effective HSP length: 44
effective length of query: 43
effective length of database: 162,773,318
effective search space: 6999252674
effective search space used: 6999252674
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 158 (66.0 bits)