BLASTP 2.0.10 [Aug-26-1999]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= PABs10979 794401 794114 -96 !not a gene!
(96 letters)
Database: ./suso.pep; /banques/blast2/nr.pep
598,487 sequences; 189,106,746 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|Q60329|Y014_METJA HYPOTHETICAL PROTEIN MJ0014 >gi|2128081|pir... 98 2e-20
gb|AAK41872.1| First ORF in transposon ISC1778 [Sulfolobus solfa... 69 1e-11
gb|AAK41954.1| Orf in partial transposon ISC1778 [Sulfolobus sol... 69 1e-11
gb|AAK43047.1| First ORF in transposon ISC1778 [Sulfolobus solfa... 68 2e-11
gb|AAK41573.1| First ORF in transposon ISC1778 [Sulfolobus solfa... 68 3e-11
emb|CAB58176.1| (X56616) putative resolvase [Acidianus ambivalens] 67 4e-11
gb|AAK41335.1| First ORF in transposon ISC1778 [Sulfolobus solfa... 66 9e-11
>sp|Q60329|Y014_METJA HYPOTHETICAL PROTEIN MJ0014 >gi|2128081|pir||F64301 hypothetical
protein MJ0014 - Methanococcus jannaschii
>gi|1590824|gb|AAB97992.1| (U67460) conserved
hypothetical protein [Methanococcus jannaschii]
Length = 213
Score = 97.9 bits (240), Expect = 2e-20
Identities = 45/100 (45%), Positives = 69/100 (69%), Gaps = 4/100 (4%)
Query: 1 MQESQAGHKRTTWRDKSKQSSKIIITHPDRLTRFGFETLKTLFQAFRTEIIVINKTQKEP 60
+ E + +K+ +++ K+II +PDRLTRFGFETLK F+++ TEI++INK K P
Sbjct: 107 LNEKRKNYKKLLKMVMNRKVEKVIIAYPDRLTRFGFETLKEFFKSYGTEIVIINKKHKTP 166
Query: 61 REELIEDLITITSHFNGRC----PHKYKEVVENAKQLFKK 96
+EEL+EDLITI SHF G+ HKYK++ + K++ ++
Sbjct: 167 QEELVEDLITIVSHFAGKLYGMHSHKYKKLTKTVKEIVRE 206
>gb|AAK41872.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 193
Score = 69.1 bits (166), Expect = 1e-11
Identities = 33/81 (40%), Positives = 54/81 (65%), Gaps = 4/81 (4%)
Query: 17 SKQSSKIIITHPDRLTRFGFETLKTLFQAFRTEIIVINKTQKEPREELIEDLITITSHFN 76
+ + S+++I +PDRL RFGFE L+ +A EI+V+N+ K P EEL+EDL+++ F+
Sbjct: 111 NNEVSRVVIAYPDRLVRFGFEILEETCKAHGCEIVVLNQEDKTPEEELVEDLVSVLVSFS 170
Query: 77 ----GRCPHKYKEVVENAKQL 93
G HKY++V + A++L
Sbjct: 171 EKLYGMRSHKYEKVKKCAEEL 191
>gb|AAK41954.1| Orf in partial transposon ISC1778 [Sulfolobus solfataricus]
Length = 194
Score = 68.7 bits (165), Expect = 1e-11
Identities = 32/81 (39%), Positives = 55/81 (67%), Gaps = 4/81 (4%)
Query: 17 SKQSSKIIITHPDRLTRFGFETLKTLFQAFRTEIIVINKTQKEPREELIEDLITITSHFN 76
+ + S+++I +PDRL RFGFE L+ + ++ EI+VIN+ K P EEL+EDL++I F+
Sbjct: 112 NNEVSRVVIAYPDRLVRFGFEILEEVCKSHNCEIVVINQEDKTPEEELVEDLVSILVLFS 171
Query: 77 GRC----PHKYKEVVENAKQL 93
G+ H+Y++V + ++L
Sbjct: 172 GKLYGMRSHEYEKVKKCVEEL 192
>gb|AAK43047.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 194
Score = 68.3 bits (164), Expect = 2e-11
Identities = 34/81 (41%), Positives = 53/81 (64%), Gaps = 4/81 (4%)
Query: 17 SKQSSKIIITHPDRLTRFGFETLKTLFQAFRTEIIVINKTQKEPREELIEDLITITSHFN 76
+ + S++I +PDRL RFGFE L+ + +A EI+V+N+ K P EEL+EDL TI F+
Sbjct: 112 NNEVSRVITAYPDRLVRFGFEILEEVCKAHNCEIVVLNQEDKTPEEELVEDLATILVSFS 171
Query: 77 GRC----PHKYKEVVENAKQL 93
G+ KY++V + A++L
Sbjct: 172 GKLHGMRSQKYEKVKKCAEEL 192
>gb|AAK41573.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 192
Score = 67.5 bits (162), Expect = 3e-11
Identities = 35/81 (43%), Positives = 56/81 (68%), Gaps = 6/81 (7%)
Query: 17 SKQSSKIIITHPDRLTRFGFETLKTLFQAFRTEIIVINKTQKEPREELIEDLITITSHFN 76
+ + S+++I +PDRL RFGFE L+ + +A EI+VIN+ KE EEL+EDL++I F+
Sbjct: 112 NNEVSRVVIAYPDRLVRFGFEILEEVCKAHGCEIVVINQEDKE--EELVEDLVSILLSFS 169
Query: 77 GRC----PHKYKEVVENAKQL 93
G+ HKY++V + A++L
Sbjct: 170 GKLHGMRSHKYEKVKKCAEEL 190
>emb|CAB58176.1| (X56616) putative resolvase [Acidianus ambivalens]
Length = 194
Score = 67.1 bits (161), Expect = 4e-11
Identities = 30/76 (39%), Positives = 48/76 (62%)
Query: 17 SKQSSKIIITHPDRLTRFGFETLKTLFQAFRTEIIVINKTQKEPREELIEDLITITSHFN 76
+ + SK++I +PDRL RFGFE L+ + +A E++V+N K P +EL+EDLI+I F+
Sbjct: 112 NNEVSKVVIAYPDRLVRFGFEILEEVCKAHNCELVVLNNEDKTPEQELVEDLISILVSFS 171
Query: 77 GRCPHKYKEVVENAKQ 92
G+ + E K+
Sbjct: 172 GKLQGMRSQKYEKVKK 187
>gb|AAK41335.1| First ORF in transposon ISC1778 [Sulfolobus solfataricus]
Length = 146
Score = 66.0 bits (158), Expect = 9e-11
Identities = 32/81 (39%), Positives = 55/81 (67%), Gaps = 5/81 (6%)
Query: 17 SKQSSKIIITHPDRLTRFGFETLKTLFQAFRTEIIVINKTQKEPREELIEDLITITSHFN 76
+ + S++++ +PD+L RFGFE L+ ++A EI+VIN+ K P EEL+EDL++ F+
Sbjct: 65 NNEVSRVVVAYPDKLVRFGFEILEETYKAHGCEIVVINQEDKTP-EELVEDLVSTLVSFS 123
Query: 77 GRC----PHKYKEVVENAKQL 93
G+ HKY++V + A++L
Sbjct: 124 GKLYGMRSHKYEKVKKCAEEL 144
Database: ./suso.pep
Posted date: Jul 6, 2001 5:57 PM
Number of letters in database: 840,471
Number of sequences in database: 2977
Database: /banques/blast2/nr.pep
Posted date: Dec 14, 2000 12:46 PM
Number of letters in database: 188,266,275
Number of sequences in database: 595,510
Lambda K H
0.319 0.133 0.379
Gapped
Lambda K H
0.270 0.0470 0.230
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31870451
Number of Sequences: 2977
Number of extensions: 1023823
Number of successful extensions: 2688
Number of sequences better than 1.0e-10: 7
Number of HSP's better than 0.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2676
Number of HSP's gapped (non-prelim): 8
length of query: 96
length of database: 189,106,746
effective HSP length: 54
effective length of query: 42
effective length of database: 156,788,448
effective search space: 6585114816
effective search space used: 6585114816
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 158 (66.0 bits)