BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs11071 754612 754406 -69 !not a gene!
         (69 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G72510 hypothetical protein APE2061 - Aeropyrum pernix (str...    68  2e-11

>pir||G72510 hypothetical protein APE2061 - Aeropyrum pernix (strain K1)
          >gi|5105759|dbj|BAA81071.1| (AP000063) 114aa long
          hypothetical protein [Aeropyrum pernix]
          Length = 114
          
 Score = 67.5 bits (162), Expect = 2e-11
 Identities = 33/69 (47%), Positives = 39/69 (55%)

Query: 1  MTAILSLIAMASSWSWVTYIVVMPNSFCILFIXXXXXXXXXXXXXXXXXXKRRTSGSITN 60
          M AILS IA AS WSWVTY+ V+P+SFC  F                   + RTSGS+T 
Sbjct: 1  MMAILSAIARASLWSWVTYMAVIPSSFCSFFSSLLILILSRASRLLRGSSRSRTSGSLTR 60

Query: 61 ALAKATLCC 69
          A A+AT CC
Sbjct: 61 ARARATRCC 69


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.131    0.421 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14881653
Number of Sequences: 2977
Number of extensions: 224157
Number of successful extensions: 626
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 1
length of query: 69
length of database: 189,106,746
effective HSP length: 48
effective length of query: 21
effective length of database: 160,379,370
effective search space: 3367966770
effective search space used: 3367966770
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (22.0 bits)
S2: 156 (65.2 bits)