BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs11097 747812 747651 -54 !not a gene!
         (54 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

emb|CAC11662.1| (AL445064) conserved hypothetical membrane prote...    82  6e-16

>emb|CAC11662.1| (AL445064) conserved hypothetical membrane protein [Thermoplasma
           acidophilum]
           Length = 171
           
 Score = 82.3 bits (200), Expect = 6e-16
 Identities = 42/52 (80%), Positives = 43/52 (81%)

Query: 3   SFTNLTCLTASTMFPVPASPFVLIIAAPSQILLTASPRFLAPQTKGAVNFFL 54
           SFT L CLTAS MFPVPASPFVLIIAAPS IL TAS RFLAP+T G V FFL
Sbjct: 120 SFTFLICLTASMMFPVPASPFVLIIAAPSNILRTASGRFLAPETTGTVRFFL 171


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.330    0.138    0.409 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17992215
Number of Sequences: 2977
Number of extensions: 483618
Number of successful extensions: 1401
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1400
Number of HSP's gapped (non-prelim): 1
length of query: 54
length of database: 189,106,746
effective HSP length: 33
effective length of query: 21
effective length of database: 169,356,675
effective search space: 3556490175
effective search space used: 3556490175
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 156 (65.2 bits)