BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs11287 684642 684424 -73 !not a gene!
         (73 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71016 hypothetical protein PH1425 - Pyrococcus horikoshii ...    85  1e-16

>pir||C71016 hypothetical protein PH1425 - Pyrococcus horikoshii
           >gi|3257848|dbj|BAA30531.1| (AP000006) 194aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 194
           
 Score = 84.7 bits (206), Expect = 1e-16
 Identities = 40/66 (60%), Positives = 50/66 (75%)

Query: 8   LLEHVSYVTGCKYSWNLCSHVHVNLYVAVFIRYAEVLHEISFRLVTYEDENSIDFLLEGF 67
           LLEHVSYV+  +YSWNL SHVH+N  V +FI Y ++L+E+  RLVTYE E++ID LL  F
Sbjct: 85  LLEHVSYVSCSEYSWNLSSHVHINWNVTIFICYPQMLNEVRLRLVTYEYEDTIDLLLNRF 144

Query: 68  SSFNVL 73
           S  NVL
Sbjct: 145 SRLNVL 150


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.140    0.438 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27677810
Number of Sequences: 2977
Number of extensions: 878020
Number of successful extensions: 2245
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2244
Number of HSP's gapped (non-prelim): 1
length of query: 73
length of database: 189,106,746
effective HSP length: 46
effective length of query: 27
effective length of database: 161,576,344
effective search space: 4362561288
effective search space used: 4362561288
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.7 bits)
S2: 157 (65.6 bits)