BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs11300 682118 681822 -99 !not a gene!
         (99 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D75113 hypothetical protein PAB2415 - Pyrococcus abyssi (st...    67  5e-11

>pir||D75113 hypothetical protein PAB2415 - Pyrococcus abyssi (strain Orsay)
          >gi|5458132|emb|CAB49621.1| (AJ248285) hypothetical
          protein [Pyrococcus abyssi]
          Length = 235
          
 Score = 67.1 bits (161), Expect = 5e-11
 Identities = 39/96 (40%), Positives = 55/96 (56%), Gaps = 11/96 (11%)

Query: 1  MKRALAFLSLMVIFASLMVALSPKYGIKFGLGGEDWKRYRYTDDYYINHGLEEVGGMNIV 60
          +KR LA +++++I   L   L+    + FG      +       YY+NH  E+ G +N V
Sbjct: 2  LKRVLAIITILIIGYWLAEGLA---NVPFG------QDKMLVGQYYLNHVKEQTGAVNAV 52

Query: 61 TDIVFDYRGYDTLGEATVLFTAIAGAVALLRPWRRE 96
          T +V +YRG+DTLGE TVLF A  G  ALL  WRR+
Sbjct: 53 TAVVVNYRGFDTLGEVTVLFIASTGVAALL--WRRK 86


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.143    0.437 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36235399
Number of Sequences: 2977
Number of extensions: 1406324
Number of successful extensions: 10933
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10933
Number of HSP's gapped (non-prelim): 1
length of query: 99
length of database: 189,106,746
effective HSP length: 47
effective length of query: 52
effective length of database: 160,977,857
effective search space: 8370848564
effective search space used: 8370848564
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 159 (66.3 bits)