BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs11404 656626 656384 -81 !not a gene!
         (81 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71021 hypothetical protein PH1462 - Pyrococcus horikoshii ...   113  2e-25

>pir||A71021 hypothetical protein PH1462 - Pyrococcus horikoshii
          >gi|3257886|dbj|BAA30569.1| (AP000006) 483aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 483
          
 Score =  113 bits (281), Expect = 2e-25
 Identities = 59/82 (71%), Positives = 66/82 (79%), Gaps = 1/82 (1%)

Query: 1  MIGVVSFTDPRETALSDEREKAIMEKHNYIIKELS-EFEVLDINKELGKPRNGIFGINSI 59
          MIGV SFTDPRETALS ERE+AI EKH  ++KELS EFEVLDIN  LGK    +FGINS+
Sbjct: 1  MIGVASFTDPRETALSSEREEAIKEKHEKLVKELSKEFEVLDINARLGKYSKDVFGINSV 60

Query: 60 KEAITAGRIAKERGVSGVIIGL 81
           EAI AGRIAK  G+SGVI+GL
Sbjct: 61 DEAIKAGRIAKSEGLSGVILGL 82


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.139    0.370 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27349097
Number of Sequences: 2977
Number of extensions: 890224
Number of successful extensions: 2531
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2528
Number of HSP's gapped (non-prelim): 1
length of query: 81
length of database: 189,106,746
effective HSP length: 54
effective length of query: 27
effective length of database: 156,788,448
effective search space: 4233288096
effective search space used: 4233288096
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.5 bits)
S2: 157 (65.6 bits)