BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs12050 475961 475689 -91 !not a gene!
         (91 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71048 hypothetical protein PH1677 - Pyrococcus horikoshii ...    71  2e-12

>pir||E71048 hypothetical protein PH1677 - Pyrococcus horikoshii
           >gi|3258106|dbj|BAA30789.1| (AP000006) 104aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 104
           
 Score = 71.0 bits (171), Expect = 2e-12
 Identities = 39/66 (59%), Positives = 41/66 (62%)

Query: 1   MPRXXXXXXXXXXXXLAVPSPPANTTKDTPRFSISLARIFVSSAEVSGILTPKISRNLIS 60
           +PR            LAVPSPPAN     P F+ISLA   VSSAEVSGILTP IS   IS
Sbjct: 39  IPRIGISLSTASVTSLAVPSPPANNNSSAPFFTISLASTLVSSAEVSGILTPIISLYPIS 98

Query: 61  LCLITS 66
           LCLITS
Sbjct: 99  LCLITS 104


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.131    0.365 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27847534
Number of Sequences: 2977
Number of extensions: 810496
Number of successful extensions: 1621
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1620
Number of HSP's gapped (non-prelim): 1
length of query: 91
length of database: 189,106,746
effective HSP length: 55
effective length of query: 36
effective length of database: 156,189,961
effective search space: 5622838596
effective search space used: 5622838596
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 158 (66.0 bits)