BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs12358 395137 394922 -72 !not a gene!
         (72 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71115 hypothetical protein PH0691 - Pyrococcus horikoshii ...    80  3e-15

>pir||D71115 hypothetical protein PH0691 - Pyrococcus horikoshii
           >gi|3257099|dbj|BAA29782.1| (AP000003) 439aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 439
           
 Score = 80.0 bits (194), Expect = 3e-15
 Identities = 34/49 (69%), Positives = 42/49 (85%)

Query: 8   SLPKLYVADTGFPTVFEVRDIGYRMENLVAIELLRRKYYREPMPNVNYW 56
           S+PKLYVAD GFPTV  V+DIG+R+EN+VA+ELLRRKYY+EP   + YW
Sbjct: 310 SIPKLYVADVGFPTVLGVKDIGHRIENIVALELLRRKYYQEPRLEIRYW 358


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.136    0.421 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27733823
Number of Sequences: 2977
Number of extensions: 888918
Number of successful extensions: 1612
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1611
Number of HSP's gapped (non-prelim): 1
length of query: 72
length of database: 189,106,746
effective HSP length: 47
effective length of query: 25
effective length of database: 160,977,857
effective search space: 4024446425
effective search space used: 4024446425
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 156 (65.2 bits)