BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs12932 237951 237787 -55 !not a gene!
         (55 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71249 hypothetical protein PH0248 - Pyrococcus horikoshii ...    81  1e-15

>pir||A71249 hypothetical protein PH0248 - Pyrococcus horikoshii
          >gi|3256637|dbj|BAA29320.1| (AP000001) 105aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 105
          
 Score = 81.1 bits (197), Expect = 1e-15
 Identities = 38/55 (69%), Positives = 45/55 (81%)

Query: 1  MLSPCLTESASTACPKASWMNTPASSGSIMIGISPEGGDLADKRDSALLEMKLAQ 55
          MLS C T SAS ACP+ASWM TPA+SGSI+  ISPEGGDLA+ +++A LE KLAQ
Sbjct: 31 MLSSCFTASASLACPRASWMKTPANSGSIITCISPEGGDLAESKETAFLETKLAQ 85


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.310    0.124    0.357 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19923916
Number of Sequences: 2977
Number of extensions: 547872
Number of successful extensions: 1960
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1959
Number of HSP's gapped (non-prelim): 1
length of query: 55
length of database: 189,106,746
effective HSP length: 34
effective length of query: 21
effective length of database: 168,758,188
effective search space: 3543921948
effective search space used: 3543921948
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 156 (65.2 bits)