BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs13114 188453 188184 -90 !not a gene!
         (90 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71242 hypothetical protein PH0198 - Pyrococcus horikoshii ...   128  1e-29

>pir||D71242 hypothetical protein PH0198 - Pyrococcus horikoshii
           >gi|3256584|dbj|BAA29267.1| (AP000001) 168aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 168
           
 Score =  128 bits (318), Expect = 1e-29
 Identities = 67/90 (74%), Positives = 71/90 (78%)

Query: 1   MAFSLTSSLIVISSYPLRIGASSLFLSKAKIRFGFTASIFILFSSTPDPYIIPVVSMSTT 60
           +  SLT S  VISS PL IG SS  LS+A IR GF ASIFILFSSTP PYI+PVVSMSTT
Sbjct: 79  LTLSLTLSFNVISSNPLIIGVSSFSLSRASIRSGFIASIFILFSSTPGPYIMPVVSMSTT 138

Query: 61  SENFMANSLNFITPTTISPKYWFGVIVPMK 90
           SENF+ANS NFITP TISPK W GVIVP K
Sbjct: 139 SENFLANSANFITPITISPKNWLGVIVPTK 168


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.136    0.390 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29989454
Number of Sequences: 2977
Number of extensions: 1000172
Number of successful extensions: 2779
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2778
Number of HSP's gapped (non-prelim): 1
length of query: 90
length of database: 189,106,746
effective HSP length: 52
effective length of query: 38
effective length of database: 157,985,422
effective search space: 6003446036
effective search space used: 6003446036
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 158 (66.0 bits)