BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs13263 150685 150464 -74 !not a gene!
         (74 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B71236 hypothetical protein PH0148 - Pyrococcus horikoshii ...    76  5e-14

>pir||B71236 hypothetical protein PH0148 - Pyrococcus horikoshii
           >gi|3256534|dbj|BAA29217.1| (AP000001) 106aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 106
           
 Score = 75.7 bits (183), Expect = 5e-14
 Identities = 42/70 (60%), Positives = 44/70 (62%)

Query: 5   SIFPGDSRNFKYRESKVFTSVLKTFNIGISLPSSCFIEVAPSGTLLLTLSPIPRITFSPL 64
           SI  G  R FKY  SK     LKT N G S PSS FIEVAP GTLLLT +PIP    SP 
Sbjct: 37  SISMGFLRKFKYSLSKFVIKDLKTLNSGTSEPSSSFIEVAPFGTLLLTFNPIPSTILSPF 96

Query: 65  ASTRTPATFL 74
            ST+TPA FL
Sbjct: 97  PSTKTPAIFL 106


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.136    0.388 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26516740
Number of Sequences: 2977
Number of extensions: 929017
Number of successful extensions: 1956
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1955
Number of HSP's gapped (non-prelim): 1
length of query: 74
length of database: 189,106,746
effective HSP length: 53
effective length of query: 21
effective length of database: 157,386,935
effective search space: 3305125635
effective search space used: 3305125635
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 156 (65.2 bits)