BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs13722 26654 26457 -66 !not a gene!
         (66 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P81308|Y45A_METJA HYPOTHETICAL PROTEIN MJ0458.1 >gi|2826285|g...    84  2e-16
gb|AAK40522.1| Conserved hypothetical protein [Sulfolobus solfat...    70  4e-12

>sp|P81308|Y45A_METJA HYPOTHETICAL PROTEIN MJ0458.1 >gi|2826285|gb|AAB98468.1| (U67497)
          M. jannaschii predicted coding region MJ0458.1
          [Methanococcus jannaschii]
          Length = 57
          
 Score = 84.3 bits (205), Expect = 2e-16
 Identities = 37/58 (63%), Positives = 41/58 (69%), Gaps = 3/58 (5%)

Query: 9  ELKFEIPVCTSCGREITPREHATHFVCPNCGEAIIWRCETCRLLAKPYKCPKCGWEGP 66
          E+K+   VC SC  EI PRE +T F CPNCGE  I RCE CR L  PYKCPKCG+EGP
Sbjct: 3  EMKY---VCISCNAEIAPREKSTKFPCPNCGEVEIVRCERCRKLNNPYKCPKCGFEGP 57


>gb|AAK40522.1| Conserved hypothetical protein [Sulfolobus solfataricus]
          Length = 65
          
 Score = 69.9 bits (168), Expect = 4e-12
 Identities = 28/60 (46%), Positives = 37/60 (61%)

Query: 7  NVELKFEIPVCTSCGREITPREHATHFVCPNCGEAIIWRCETCRLLAKPYKCPKCGWEGP 66
          ++  + E P+C+SCG+ I PRE    F CPNCGE +I R   CR     Y CP CG++GP
Sbjct: 6  SIREEVEPPICSSCGKIIHPREKGVEFYCPNCGEVLIRRDHMCRKQGAEYICPNCGFKGP 65


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.141    0.532 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28348438
Number of Sequences: 2977
Number of extensions: 906568
Number of successful extensions: 8309
Number of sequences better than 1.0e-10: 2
Number of HSP's better than  0.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8306
Number of HSP's gapped (non-prelim): 2
length of query: 66
length of database: 189,106,746
effective HSP length: 38
effective length of query: 28
effective length of database: 166,364,240
effective search space: 4658198720
effective search space used: 4658198720
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 157 (65.6 bits)