BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs13800 255675 255860 62 !not a gene!
         (62 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B71452 hypothetical protein PH0273 - Pyrococcus horikoshii ...    95  1e-19

>pir||B71452 hypothetical protein PH0273 - Pyrococcus horikoshii
           >gi|3256662|dbj|BAA29345.1| (AP000001) 233aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 233
           
 Score = 94.8 bits (232), Expect = 1e-19
 Identities = 40/62 (64%), Positives = 48/62 (76%)

Query: 1   MVYPFSPFLYELRYWGIFARSFQELYPALPNLYNCHLNLLVWHFFNLFNLKSKPFPNLNS 60
           +VYPFS FL EL YWG+F+   Q+L    PNLY+C+LN L+W FFNLFNLKSKPFP+ NS
Sbjct: 41  VVYPFSSFLDELCYWGVFSCGLQQLNSVFPNLYDCYLNFLIWDFFNLFNLKSKPFPDFNS 100

Query: 61  LF 62
            F
Sbjct: 101 FF 102


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.333    0.149    0.523 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26710246
Number of Sequences: 2977
Number of extensions: 891647
Number of successful extensions: 2127
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2126
Number of HSP's gapped (non-prelim): 1
length of query: 62
length of database: 189,106,746
effective HSP length: 38
effective length of query: 24
effective length of database: 166,364,240
effective search space: 3992741760
effective search space used: 3992741760
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 156 (65.2 bits)