BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs13828 565827 565654 -58 !not a gene!
         (58 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71034 hypothetical protein PH1561 - Pyrococcus horikoshii ...    74  2e-13

>pir||A71034 hypothetical protein PH1561 - Pyrococcus horikoshii
          >gi|3257990|dbj|BAA30673.1| (AP000006) 130aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 130
          
 Score = 73.7 bits (178), Expect = 2e-13
 Identities = 37/58 (63%), Positives = 41/58 (69%)

Query: 1  MPRSLLISLGVLPFFKSSSIIMRVLYEYFLGLPLPFSTGITFIPICSSARKTFLETFG 58
          +P  LLISLGV P    S I  +VL EYFLGLPLPFSTG+  IPICS A  TFL+T G
Sbjct: 3  IPSVLLISLGVFPLLSISFITSKVLVEYFLGLPLPFSTGMILIPICSRALITFLDTLG 60


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.332    0.148    0.443 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19303273
Number of Sequences: 2977
Number of extensions: 542434
Number of successful extensions: 1320
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1319
Number of HSP's gapped (non-prelim): 1
length of query: 58
length of database: 189,106,746
effective HSP length: 37
effective length of query: 21
effective length of database: 166,962,727
effective search space: 3506217267
effective search space used: 3506217267
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.9 bits)
S2: 156 (65.2 bits)