BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs2487 21754 22047 98 !not a gene!
         (98 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E72756 hypothetical protein APE0042 - Aeropyrum pernix (str...    76  1e-13

>pir||E72756 hypothetical protein APE0042 - Aeropyrum pernix (strain K1)
          >gi|5103430|dbj|BAA78951.1| (AP000058) 110aa long
          hypothetical protein [Aeropyrum pernix]
          Length = 110
          
 Score = 75.7 bits (183), Expect = 1e-13
 Identities = 43/80 (53%), Positives = 50/80 (61%)

Query: 12 VTSLSPKYILPSVGSSKPAIILSVVVFPQPLGPRRTKNSPSLIVRFSLFTAVKFPNFLVK 71
          +TS     ILPS G S+PA+  SVVVFPQPLGPRRTKNSPSL++R +  TA   PN L  
Sbjct: 1  MTSSPSISILPSSGYSRPAMSRSVVVFPQPLGPRRTKNSPSLMLRSTWSTATTLPNLLTT 60

Query: 72 FSSLTSTILITSRLYPTSLP 91
           SSL S I  +    P   P
Sbjct: 61 PSSLISAIQASPLRSPADKP 80


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.138    0.398 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35719061
Number of Sequences: 2977
Number of extensions: 1282573
Number of successful extensions: 2365
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2364
Number of HSP's gapped (non-prelim): 1
length of query: 98
length of database: 189,106,746
effective HSP length: 52
effective length of query: 46
effective length of database: 157,985,422
effective search space: 7267329412
effective search space used: 7267329412
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 159 (66.3 bits)