BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs2554 42770 43027 86 !not a gene!
         (86 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71222 hypothetical protein PH0038 - Pyrococcus horikoshii ...    90  4e-18

>pir||C71222 hypothetical protein PH0038 - Pyrococcus horikoshii
          >gi|3256423|dbj|BAA29106.1| (AP000001) 155aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 155
          
 Score = 90.5 bits (221), Expect = 4e-18
 Identities = 46/83 (55%), Positives = 60/83 (71%)

Query: 1  MTSGIGWLEVEEHEVVILQELNDLLSLGHLVSVVLSSCSLWGVNVKTYGPCNPLDEGYGN 60
          MT  IGWLEVEE+EVVIL++L+  LSL HL+ +VLSS  LW VNV+ +GP    ++  G 
Sbjct: 1  MTRCIGWLEVEENEVVILEKLDGFLSLRHLIGIVLSSSPLWCVNVEAHGPGYSFNQCNGY 60

Query: 61 DSCSLNFPLLRELHWNVWISSGS 83
          +SCS + PLLRELH  V IS+ +
Sbjct: 61 NSCSFDLPLLRELHRYVRISAST 83


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.317    0.138    0.448 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38694429
Number of Sequences: 2977
Number of extensions: 1437966
Number of successful extensions: 2708
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2707
Number of HSP's gapped (non-prelim): 1
length of query: 86
length of database: 189,106,746
effective HSP length: 46
effective length of query: 40
effective length of database: 161,576,344
effective search space: 6463053760
effective search space used: 6463053760
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 158 (66.0 bits)