BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs2869 163925 164182 86 !not a gene!
         (86 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71240 hypothetical protein PH0179 - Pyrococcus horikoshii ...   150  3e-36

>pir||A71240 hypothetical protein PH0179 - Pyrococcus horikoshii
           >gi|3256565|dbj|BAA29248.1| (AP000001) 118aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 118
           
 Score =  150 bits (374), Expect = 3e-36
 Identities = 78/86 (90%), Positives = 81/86 (93%)

Query: 1   MTKTSILTFLSIFATSSLLSAIRSVSALLTSTISSRNAANSCPAGIPKYLTPKSFPSWVI 60
           +TK +ILT LSIF TSSLLS I+SVS LLTSTISSRNAANSCPAGIPKYLTPKSFPSWVI
Sbjct: 33  VTKINILTSLSIFETSSLLSCIKSVSPLLTSTISSRNAANSCPAGIPKYLTPKSFPSWVI 92

Query: 61  VVAGALSILYFSASSFPSGVSKSTIS 86
           VVAGALSILYFSASSFPSGVSKSTIS
Sbjct: 93  VVAGALSILYFSASSFPSGVSKSTIS 118


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.125    0.339 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23917131
Number of Sequences: 2977
Number of extensions: 684474
Number of successful extensions: 2372
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2371
Number of HSP's gapped (non-prelim): 1
length of query: 86
length of database: 189,106,746
effective HSP length: 59
effective length of query: 27
effective length of database: 153,796,013
effective search space: 4152492351
effective search space used: 4152492351
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 156 (65.2 bits)