BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs2994 208527 208685 53 !not a gene!
         (53 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||B72580 hypothetical protein APE1922 - Aeropyrum pernix (str...    80  3e-15

>pir||B72580 hypothetical protein APE1922 - Aeropyrum pernix (strain K1)
           >gi|5105614|dbj|BAA80927.1| (AP000062) 177aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 177
           
 Score = 80.0 bits (194), Expect = 3e-15
 Identities = 35/43 (81%), Positives = 37/43 (85%)

Query: 9   IPRDRTENRHRCPWVRSLRRVGGNPAEGTRQTGPVTSGEGVPA 51
           IPR RTENRHRCPWV S RR+G NP +GTRQ GPVTSGEGVPA
Sbjct: 112 IPRARTENRHRCPWVSSPRRLGANPGQGTRQIGPVTSGEGVPA 154


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.314    0.137    0.444 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24897881
Number of Sequences: 2977
Number of extensions: 888427
Number of successful extensions: 1189
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1188
Number of HSP's gapped (non-prelim): 1
length of query: 53
length of database: 189,106,746
effective HSP length: 32
effective length of query: 21
effective length of database: 169,955,162
effective search space: 3569058402
effective search space used: 3569058402
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 156 (65.2 bits)