BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs3241 293639 293875 79 !not a gene!
         (79 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71202 hypothetical protein PH1890 - Pyrococcus horikoshii ...   115  8e-26

>pir||E71202 hypothetical protein PH1890 - Pyrococcus horikoshii
           >gi|3258329|dbj|BAA31012.1| (AP000007) 116aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 116
           
 Score =  115 bits (284), Expect = 8e-26
 Identities = 59/79 (74%), Positives = 65/79 (81%)

Query: 1   MALFMLQASTSITVAIIICFIPWIIADSASSTVIVLVASTRVSATITIANEPQSKDVAES 60
           +ALF+L A T +TVAIIICFIPWIIADS SSTVIV VA TRV AT TIANEPQS++VAES
Sbjct: 38  VALFILHAKTRMTVAIIICFIPWIIADSVSSTVIVFVARTRVRATATIANEPQSREVAES 97

Query: 61  ALPRIFITPHSPSHALLPV 79
           AL R+ I P  PSHA LPV
Sbjct: 98  ALLRMSIAPQGPSHAALPV 116


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.130    0.365 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20870481
Number of Sequences: 2977
Number of extensions: 487334
Number of successful extensions: 2197
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2196
Number of HSP's gapped (non-prelim): 1
length of query: 79
length of database: 189,106,746
effective HSP length: 58
effective length of query: 21
effective length of database: 154,394,500
effective search space: 3242284500
effective search space used: 3242284500
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 156 (65.2 bits)