BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs3546 384084 384329 82 !not a gene!
         (82 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C72479 hypothetical protein APE2475 - Aeropyrum pernix (str...   120  2e-27
pir||A71115 hypothetical protein PH0688 - Pyrococcus horikoshii ...   114  1e-25
pir||H72613 hypothetical protein APE1371 - Aeropyrum pernix (str...   104  1e-22
pir||H72504 hypothetical protein APE2014 - Aeropyrum pernix (str...    70  3e-12

>pir||C72479 hypothetical protein APE2475 - Aeropyrum pernix (strain K1)
           >gi|5106180|dbj|BAA81491.1| (AP000064) 353aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 353
           
 Score =  120 bits (299), Expect = 2e-27
 Identities = 66/83 (79%), Positives = 70/83 (83%), Gaps = 1/83 (1%)

Query: 1   MIILSVTLL-TSVPLLGAIASISSMNITVGAACLAFLNISLMFFSLSPTHLLKISGPLTA 59
           + ILSVTL+ TSVPL GA+ASISS N T GA CLAF NISL+  SLSPTHLL ISGPLTA
Sbjct: 33  LTILSVTLVPTSVPLTGAMASISSKNTTAGACCLAFANISLIALSLSPTHLLSISGPLTA 92

Query: 60  MKFAWLSVATALASKVLPVPGGP 82
           MKFA LSVATALAS VLPVPGGP
Sbjct: 93  MKFAPLSVATALASSVLPVPGGP 115


>pir||A71115 hypothetical protein PH0688 - Pyrococcus horikoshii
          >gi|3257096|dbj|BAA29779.1| (AP000003) 146aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 146
          
 Score =  114 bits (283), Expect = 1e-25
 Identities = 63/82 (76%), Positives = 67/82 (80%), Gaps = 1/82 (1%)

Query: 2  IILSVTLLTS-VPLLGAIASISSMNITVGAACLAFLNISLMFFSLSPTHLLKISGPLTAM 60
          +ILSVT   S VPL GAIASISS+ I  GAACLAFL ISL+ FSLSPTHLL  SGPLTAM
Sbjct: 1  MILSVTFSPSEVPLAGAIASISSIKIIAGAACLAFLKISLILFSLSPTHLLNTSGPLTAM 60

Query: 61 KFAWLSVATALASKVLPVPGGP 82
          K A LSVATALA +VLPVPGGP
Sbjct: 61 KLASLSVATALAKRVLPVPGGP 82


>pir||H72613 hypothetical protein APE1371 - Aeropyrum pernix (strain K1)
           >gi|5105052|dbj|BAA80366.1| (AP000061) 159aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 159
           
 Score =  104 bits (258), Expect = 1e-22
 Identities = 60/82 (73%), Positives = 62/82 (75%), Gaps = 2/82 (2%)

Query: 3   ILSVTLLTS--VPLLGAIASISSMNITVGAACLAFLNISLMFFSLSPTHLLKISGPLTAM 60
           ILSVT L S   PL GA+ASISS N T GAACLA   I  +  SLSPTHLL ISGPLTAM
Sbjct: 29  ILSVTPLVSNLAPLAGAMASISSKNTTAGAACLALSKIFRIALSLSPTHLLSISGPLTAM 88

Query: 61  KFAWLSVATALASKVLPVPGGP 82
           KFA LSVATALA  VLPVPGGP
Sbjct: 89  KFAPLSVATALARSVLPVPGGP 110


>pir||H72504 hypothetical protein APE2014 - Aeropyrum pernix (strain K1)
           >gi|5105712|dbj|BAA81024.1| (AP000063) 280aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 280
           
 Score = 70.2 bits (169), Expect = 3e-12
 Identities = 45/84 (53%), Positives = 53/84 (62%), Gaps = 3/84 (3%)

Query: 2   IILSVTLLTSVP---LLGAIASISSMNITVGAACLAFLNISLMFFSLSPTHLLKISGPLT 58
           ++L  +L   VP   LL A+ASISSMN   GA  LA LNISL   + SP +LL  S P T
Sbjct: 79  MVLCTSLSPLVPMSTLLDAMASISSMNSIEGAFSLASLNISLTSLAPSPMNLLTSSLPTT 138

Query: 59  AMKFAWLSVATALASKVLPVPGGP 82
            M  A +S ATALA +V PVPGGP
Sbjct: 139 LMNVASVSPATALARRVFPVPGGP 162


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.136    0.388 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26019240
Number of Sequences: 2977
Number of extensions: 730055
Number of successful extensions: 2558
Number of sequences better than 1.0e-10: 4
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2552
Number of HSP's gapped (non-prelim): 6
length of query: 82
length of database: 189,106,746
effective HSP length: 52
effective length of query: 30
effective length of database: 157,985,422
effective search space: 4739562660
effective search space used: 4739562660
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 157 (65.6 bits)