BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs3696 428343 428630 96 !not a gene!
         (96 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A75155 hypothetical protein PAB2083 - Pyrococcus abyssi (st...   102  8e-22

>pir||A75155 hypothetical protein PAB2083 - Pyrococcus abyssi (strain Orsay)
           >gi|5457830|emb|CAB49320.1| (AJ248284) hypothetical
           protein [Pyrococcus abyssi]
           Length = 103
           
 Score =  102 bits (252), Expect = 8e-22
 Identities = 55/90 (61%), Positives = 69/90 (76%), Gaps = 2/90 (2%)

Query: 9   LKRLLLRALNENQILILKSI--NGKHRSLNALLEELSRKERKPLSTLKLNARILKELGLI 66
           L++LL RALNENQ LIL S+  NG+ +SL +L E +S+  RKP+STLKLNA+ILKELGLI
Sbjct: 13  LRKLLERALNENQRLILCSLDNNGESKSLTSLAEGISKAHRKPVSTLKLNAKILKELGLI 72

Query: 67  EYGTREAPKPVTLTREGKFILSILEGDGFE 96
           EYGTR +P+ V LT  GKF++ IL  D  E
Sbjct: 73  EYGTRRSPRTVRLTEFGKFVIRILGADEVE 102


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.316    0.139    0.368 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32996747
Number of Sequences: 2977
Number of extensions: 1086997
Number of successful extensions: 3391
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3389
Number of HSP's gapped (non-prelim): 1
length of query: 96
length of database: 189,106,746
effective HSP length: 55
effective length of query: 41
effective length of database: 156,189,961
effective search space: 6403788401
effective search space used: 6403788401
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 158 (66.0 bits)