BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs3752 449032 449268 79 !not a gene!
         (79 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D72465 hypothetical protein APE2367 - Aeropyrum pernix (str...    78  1e-14

>pir||D72465 hypothetical protein APE2367 - Aeropyrum pernix (strain K1)
          >gi|5106069|dbj|BAA81380.1| (AP000064) 112aa long
          hypothetical protein [Aeropyrum pernix]
          Length = 112
          
 Score = 78.4 bits (190), Expect = 1e-14
 Identities = 44/76 (57%), Positives = 51/76 (66%)

Query: 4  PYPMSLHLEPICLLIATLSPGSAQTGICSFTSISSFPRPVTKPMVLAVPTFKSRTSFLFM 63
          P PMSLHL  I LL ATL+ G   TG+ S TSISSFP  VT P V+AVPT     S L +
Sbjct: 3  PQPMSLHLPIILLLRATLALGHVTTGLLSCTSISSFPALVTTPRVIAVPTESISISPLLI 62

Query: 64 GSTLSSCSVPTTLSSK 79
          GSTL+S  +PTT SS+
Sbjct: 63 GSTLASSFIPTTFSSR 78


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.322    0.132    0.392 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29090160
Number of Sequences: 2977
Number of extensions: 944453
Number of successful extensions: 2060
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2059
Number of HSP's gapped (non-prelim): 1
length of query: 79
length of database: 189,106,746
effective HSP length: 51
effective length of query: 28
effective length of database: 158,583,909
effective search space: 4440349452
effective search space used: 4440349452
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (22.0 bits)
S2: 157 (65.6 bits)