BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs3831 481277 481543 89 !not a gene!
         (89 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71047 hypothetical protein PH1670 - Pyrococcus horikoshii ...   148  8e-36

>pir||F71047 hypothetical protein PH1670 - Pyrococcus horikoshii
          >gi|3258099|dbj|BAA30782.1| (AP000006) 102aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 102
          
 Score =  148 bits (371), Expect = 8e-36
 Identities = 75/89 (84%), Positives = 81/89 (90%)

Query: 1  MTWLMLNAAPPLASASSLVNITASIFTASLNCLACSTMAFPARESPTNTTRFGFVTLAIF 60
          +TWL+L AAPPLASASS VNIT SIFTA LNCLACST+AFPA+ESPT  TR GFVTLAIF
Sbjct: 10 ITWLILKAAPPLASASSFVNITPSIFTAWLNCLACSTIAFPAKESPTKITRLGFVTLAIF 69

Query: 61 LISSIKFLLVSLLPAVSIRTTSIPLALAC 89
           ISSI+FLLVSLLPAVSI+TTSIPLALAC
Sbjct: 70 FISSIRFLLVSLLPAVSIKTTSIPLALAC 98


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.131    0.382 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26481730
Number of Sequences: 2977
Number of extensions: 734779
Number of successful extensions: 2741
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2740
Number of HSP's gapped (non-prelim): 1
length of query: 89
length of database: 189,106,746
effective HSP length: 53
effective length of query: 36
effective length of database: 157,386,935
effective search space: 5665929660
effective search space used: 5665929660
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 158 (66.0 bits)