BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs4349 671814 672086 91 !not a gene!
         (91 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||F71018 hypothetical protein PH1443 - Pyrococcus horikoshii ...    97  4e-20

>pir||F71018 hypothetical protein PH1443 - Pyrococcus horikoshii
          >gi|3257867|dbj|BAA30550.1| (AP000006) 114aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 114
          
 Score = 97.1 bits (238), Expect = 4e-20
 Identities = 44/83 (53%), Positives = 54/83 (65%)

Query: 1  MLYGSCYLSYNWIPSGKFHCIRMNYLRRAGAHYCMNLSSVPYQFSSKLYALHSRYASWDC 60
          + Y      YN I S K HCIRMNYL R   H  +NLSS+PYQFS +LYA +S Y SW+C
Sbjct: 8  VFYKPSNFRYNGITSCKLHCIRMNYLSRTRRHDSVNLSSMPYQFSCQLYAFYSCYTSWNC 67

Query: 61 KNYFFANKFPALCSVDKLNVAEH 83
          K+Y F NKF  L  +D LN+ +H
Sbjct: 68 KDYLFTNKFSTLFGIDPLNMVKH 90


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.327    0.137    0.471 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37166138
Number of Sequences: 2977
Number of extensions: 1293112
Number of successful extensions: 2840
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2839
Number of HSP's gapped (non-prelim): 1
length of query: 91
length of database: 189,106,746
effective HSP length: 44
effective length of query: 47
effective length of database: 162,773,318
effective search space: 7650345946
effective search space used: 7650345946
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.8 bits)
S2: 159 (66.3 bits)