BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs4379 679538 679723 62 !not a gene!
         (62 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71017 hypothetical protein PH1432 - Pyrococcus horikoshii ...    76  4e-14

>pir||C71017 hypothetical protein PH1432 - Pyrococcus horikoshii
          >gi|3257856|dbj|BAA30539.1| (AP000006) 143aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 143
          
 Score = 76.1 bits (184), Expect = 4e-14
 Identities = 39/51 (76%), Positives = 40/51 (77%)

Query: 12 MNLSLICQGNSPIPIIAITRMNIGSSIVAPGSFAFITFSLGLPKNVKRTLT 62
          M LSLIC GN PI IIAIT+MNIG SI APGS A ITFS GLPK V RTLT
Sbjct: 1  MILSLICHGNIPIRIIAITKMNIGMSISAPGSLALITFSFGLPKKVNRTLT 51


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.325    0.138    0.396 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20759210
Number of Sequences: 2977
Number of extensions: 588435
Number of successful extensions: 1294
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1293
Number of HSP's gapped (non-prelim): 1
length of query: 62
length of database: 189,106,746
effective HSP length: 41
effective length of query: 21
effective length of database: 164,568,779
effective search space: 3455944359
effective search space used: 3455944359
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 156 (65.2 bits)