BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs4380 679811 679987 59 !not a gene!
         (59 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71017 hypothetical protein PH1432 - Pyrococcus horikoshii ...    87  2e-17

>pir||C71017 hypothetical protein PH1432 - Pyrococcus horikoshii
           >gi|3257856|dbj|BAA30539.1| (AP000006) 143aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 143
           
 Score = 87.4 bits (213), Expect = 2e-17
 Identities = 43/59 (72%), Positives = 49/59 (82%)

Query: 1   MLAKPLRGGIPTIAAAPIRNANVVFGIVFASPLSSLRFLVPSSWSTTPATRKRSAFINA 59
           +LA P +GGIPTIAAAPI+ A VV G+VFASPLSS +FLVPSS +T PATRKR AFI A
Sbjct: 81  LLANPFKGGIPTIAAAPIKKAKVVLGMVFASPLSSFKFLVPSSCNTAPATRKRRAFIMA 139


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.134    0.394 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21650573
Number of Sequences: 2977
Number of extensions: 634466
Number of successful extensions: 1580
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1579
Number of HSP's gapped (non-prelim): 1
length of query: 59
length of database: 189,106,746
effective HSP length: 38
effective length of query: 21
effective length of database: 166,364,240
effective search space: 3493649040
effective search space used: 3493649040
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.5 bits)
S2: 156 (65.2 bits)