BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs4480 704572 704784 71 !not a gene!
         (71 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||G71013 hypothetical protein PH1405 - Pyrococcus horikoshii ...   118  9e-27

>pir||G71013 hypothetical protein PH1405 - Pyrococcus horikoshii
          >gi|3257828|dbj|BAA30511.1| (AP000006) 109aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 109
          
 Score =  118 bits (292), Expect = 9e-27
 Identities = 60/71 (84%), Positives = 65/71 (91%)

Query: 1  MASIRTSPTDGSKAIFVISASLGTISNINFSASSGGSRTSGSGLMLILFFKTLAKSFINS 60
          +ASIRTSPT+GSKA+ VISAS GTISNINFSASSGG RTSGSGL LILFFKT A+SFI+S
Sbjct: 18 LASIRTSPTEGSKAMLVISASFGTISNINFSASSGGRRTSGSGLTLILFFKTFARSFISS 77

Query: 61 PSFIIASGFLT 71
          PSFIIASGF T
Sbjct: 78 PSFIIASGFFT 88


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.319    0.132    0.348 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21937522
Number of Sequences: 2977
Number of extensions: 627149
Number of successful extensions: 1853
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1852
Number of HSP's gapped (non-prelim): 1
length of query: 71
length of database: 189,106,746
effective HSP length: 50
effective length of query: 21
effective length of database: 159,182,396
effective search space: 3342830316
effective search space used: 3342830316
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 156 (65.2 bits)