BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs4586 734256 734492 79 !not a gene!
         (79 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||A71009 hypothetical protein PH1367 - Pyrococcus horikoshii ...   132  8e-31

>pir||A71009 hypothetical protein PH1367 - Pyrococcus horikoshii
           >gi|3257790|dbj|BAA30473.1| (AP000006) 176aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 176
           
 Score =  132 bits (328), Expect = 8e-31
 Identities = 64/79 (81%), Positives = 70/79 (88%)

Query: 1   MYCFLISSRVPTVLSFPFTMIPTLSASSSTSLSMWDEKKTVFPCFFCSNIMSFTSLAPWG 60
           MYCF ISS VPTVLSFP T+IPTLSASSSTSLSMWDEKKTVFPCF CS I+SFTSLAP G
Sbjct: 98  MYCFFISSSVPTVLSFPLTIIPTLSASSSTSLSMWDEKKTVFPCFLCSLIISFTSLAPSG 157

Query: 61  SKPLVGSSSINNSGSLIKA 79
           S+PLVGSS I +SGS ++A
Sbjct: 158 SRPLVGSSRIKSSGSFMRA 176


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.321    0.130    0.402 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 26365758
Number of Sequences: 2977
Number of extensions: 782739
Number of successful extensions: 1993
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1992
Number of HSP's gapped (non-prelim): 1
length of query: 79
length of database: 189,106,746
effective HSP length: 50
effective length of query: 29
effective length of database: 159,182,396
effective search space: 4616289484
effective search space used: 4616289484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 157 (65.6 bits)