BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs4722 779298 779480 61 !not a gene!
         (61 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||D71004 hypothetical protein PH1330 - Pyrococcus horikoshii ...    93  4e-19

>pir||D71004 hypothetical protein PH1330 - Pyrococcus horikoshii
          >gi|3257753|dbj|BAA30436.1| (AP000006) 122aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 122
          
 Score = 92.8 bits (227), Expect = 4e-19
 Identities = 43/61 (70%), Positives = 48/61 (78%)

Query: 1  MRRAGKVSGVVIRTWGGFLTCLALLYWVVSPCLTSILIPVFASHHLSLSRRSLFKAFRGA 60
          +R AGK+SGVVI  WGGF TC AL+ W VSPCLTS LIPVF+ HH +LS RSLF AF GA
Sbjct: 16 VRIAGKLSGVVINMWGGFFTCFALIDWGVSPCLTSTLIPVFSPHHFNLSNRSLFNAFNGA 75

Query: 61 I 61
          I
Sbjct: 76 I 76


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.334    0.143    0.468 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20578736
Number of Sequences: 2977
Number of extensions: 560887
Number of successful extensions: 2194
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2193
Number of HSP's gapped (non-prelim): 1
length of query: 61
length of database: 189,106,746
effective HSP length: 40
effective length of query: 21
effective length of database: 165,167,266
effective search space: 3468512586
effective search space used: 3468512586
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 39 (21.6 bits)
S2: 156 (65.2 bits)