BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs4772 794709 794960 84 !not a gene!
         (84 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H71001 hypothetical protein PH1311 - Pyrococcus horikoshii ...   124  2e-28

>pir||H71001 hypothetical protein PH1311 - Pyrococcus horikoshii
           >gi|3257733|dbj|BAA30416.1| (AP000006) 160aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 160
           
 Score =  124 bits (308), Expect = 2e-28
 Identities = 55/83 (66%), Positives = 71/83 (85%)

Query: 2   LDRRKFEVVIEETVHGYDAPVIVLKYRGKYFLLDGHHRVLARKVLKLDFVEALVLEPLEP 61
           L+RRK E+VIE+T+HGYDAPVIVL+Y GKY+LLDGHHR  ARK LKL FVEA++L PL+P
Sbjct: 73  LERRKLEIVIEKTIHGYDAPVIVLEYNGKYYLLDGHHRAYARKALKLGFVEAIILRPLKP 132

Query: 62  VDIKIEESVKRQRIRSIDDIIVK 84
           + I IEESV++Q IR +DD+ ++
Sbjct: 133 IKINIEESVEKQGIRKLDDLRIR 155


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.326    0.147    0.408 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27829092
Number of Sequences: 2977
Number of extensions: 909518
Number of successful extensions: 2715
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2714
Number of HSP's gapped (non-prelim): 1
length of query: 84
length of database: 189,106,746
effective HSP length: 50
effective length of query: 34
effective length of database: 159,182,396
effective search space: 5412201464
effective search space used: 5412201464
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 157 (65.6 bits)