BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs5341 986026 986217 64 !not a gene!
         (64 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||C71066 hypothetical protein PH1225 - Pyrococcus horikoshii ...    80  2e-15

>pir||C71066 hypothetical protein PH1225 - Pyrococcus horikoshii
           >gi|3257642|dbj|BAA30325.1| (AP000005) 173aa long
           hypothetical protein [Pyrococcus horikoshii]
           Length = 173
           
 Score = 80.4 bits (195), Expect = 2e-15
 Identities = 36/57 (63%), Positives = 45/57 (78%)

Query: 1   MLLLPIVYWISVLHYIGEEELFLREKFGEEWEEYSRKTPRFIPKLFELPRKHCNGER 57
           ML LP+VYWIS+L+YI EEE FL  +FG+EWEEY+ + PRFIP LFE+ +K   GER
Sbjct: 116 MLGLPVVYWISILYYIEEEERFLHVRFGKEWEEYASRVPRFIPNLFEVIKKLDPGER 172


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.323    0.146    0.468 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28779718
Number of Sequences: 2977
Number of extensions: 1029714
Number of successful extensions: 1890
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1889
Number of HSP's gapped (non-prelim): 1
length of query: 64
length of database: 189,106,746
effective HSP length: 43
effective length of query: 21
effective length of database: 163,371,805
effective search space: 3430807905
effective search space used: 3430807905
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 156 (65.2 bits)