BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs5502 1045466 1045729 88 !not a gene!
         (88 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||H72469 hypothetical protein APE2401 - Aeropyrum pernix (str...    78  1e-14

>pir||H72469 hypothetical protein APE2401 - Aeropyrum pernix (strain K1)
           >gi|5106105|dbj|BAA81416.1| (AP000064) 252aa long
           hypothetical protein [Aeropyrum pernix]
           Length = 252
           
 Score = 78.4 bits (190), Expect = 1e-14
 Identities = 47/84 (55%), Positives = 50/84 (58%)

Query: 4   SPSMCPPLTITALAPVSSAIFFAAILASSTVLIFIPLNFSASNLFGVTRVANGSMYLIRA 63
           SP   PPLT  A AP SS +  AA LA S    F P+  SAS  FGVT VA G      A
Sbjct: 58  SPLRWPPLTTAASAPSSSTMILAASLAVSRSTTFTPVRTSASGAFGVTIVARGITSFFNA 117

Query: 64  STASSLKSGAPLLAIITGSTTSGK 87
           S+AS L S APLLA ITGSTT GK
Sbjct: 118 SSASGLSSLAPLLATITGSTTRGK 141


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.318    0.127    0.342 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25702241
Number of Sequences: 2977
Number of extensions: 719135
Number of successful extensions: 2562
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2561
Number of HSP's gapped (non-prelim): 1
length of query: 88
length of database: 189,106,746
effective HSP length: 59
effective length of query: 29
effective length of database: 153,796,013
effective search space: 4460084377
effective search space used: 4460084377
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.8 bits)
S2: 157 (65.6 bits)