BLASTP 2.0.10 [Aug-26-1999]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PABs5535 1052330 1052560 77 !not a gene!
         (77 letters)

Database: ./suso.pep; /banques/blast2/nr.pep
           598,487 sequences; 189,106,746 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

pir||E71056 hypothetical protein PH1147 - Pyrococcus horikoshii ...   127  3e-29

>pir||E71056 hypothetical protein PH1147 - Pyrococcus horikoshii
          >gi|3257564|dbj|BAA30247.1| (AP000005) 108aa long
          hypothetical protein [Pyrococcus horikoshii]
          Length = 108
          
 Score =  127 bits (315), Expect = 3e-29
 Identities = 60/75 (80%), Positives = 67/75 (89%)

Query: 1  MPLIAGGLLMSLVVTYCKNLRASFPLKYISPIWDTSNSPTAFLTAKCSSFMLEYHIGISQ 60
          +PLIAGGLL+S VVTYC+N +AS PL  ISP+ +TSN PTAFLTA+CSSFMLEYHIGIS 
Sbjct: 21 VPLIAGGLLISFVVTYCRNFKASLPLNTISPMCETSNIPTAFLTARCSSFMLEYHIGISH 80

Query: 61 PANSSIFLACSLCQS 75
          PANSSIFLACSLCQS
Sbjct: 81 PANSSIFLACSLCQS 95


  Database: ./suso.pep
    Posted date:  Jul 6, 2001  5:57 PM
  Number of letters in database: 840,471
  Number of sequences in database:  2977
  
  Database: /banques/blast2/nr.pep
    Posted date:  Dec 14, 2000 12:46 PM
  Number of letters in database: 188,266,275
  Number of sequences in database:  595,510
  
Lambda     K      H
   0.324    0.134    0.416 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28536285
Number of Sequences: 2977
Number of extensions: 916651
Number of successful extensions: 2220
Number of sequences better than 1.0e-10: 1
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2219
Number of HSP's gapped (non-prelim): 1
length of query: 77
length of database: 189,106,746
effective HSP length: 48
effective length of query: 29
effective length of database: 160,379,370
effective search space: 4651001730
effective search space used: 4651001730
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 40 (21.6 bits)
S2: 157 (65.6 bits)